View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19100_low_4 (Length: 471)
Name: NF19100_low_4
Description: NF19100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19100_low_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 32914973 - 32915414
Alignment:
| Q |
15 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914973 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
32915072 |
T |
|
| Q |
115 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915073 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
32915172 |
T |
|
| Q |
215 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32915173 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactcca |
32915272 |
T |
|
| Q |
315 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915273 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaata |
32915372 |
T |
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| Q |
415 |
gttgcatgccaaatgatccacaaacctttcaaattatctact |
456 |
Q |
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| T |
32915373 |
gttgcatgccaaatgatccacaaacctttcaaattatctact |
32915414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
| Q |
348 |
atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
437 |
Q |
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| T |
24945456 |
atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa |
24945367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 231 - 443
Target Start/End: Complemental strand, 2308361 - 2308149
Alignment:
| Q |
231 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc |
330 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| || ||| |||||||||||| ||||||||| ||| |
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| T |
2308361 |
ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacc |
2308262 |
T |
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| Q |
331 |
acaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatga |
430 |
Q |
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||||| |||||||||| ||| ||||||||| | ||||||||| | |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2308261 |
acaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatga |
2308162 |
T |
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| Q |
431 |
tccacaaaccttt |
443 |
Q |
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||||||||||||| |
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| T |
2308161 |
tccacaaaccttt |
2308149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 232 - 437
Target Start/End: Original strand, 9359281 - 9359486
Alignment:
| Q |
232 |
tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacca |
331 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||| |||| |||||| |||||||||||||||| |||||||| | |
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| T |
9359281 |
tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaa |
9359380 |
T |
|
| Q |
332 |
caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgat |
431 |
Q |
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|||| |||| |||||||||||||||||| ||||||||||| || || |||| ||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
9359381 |
caatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataat |
9359480 |
T |
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| Q |
432 |
ccacaa |
437 |
Q |
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|||||| |
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| T |
9359481 |
ccacaa |
9359486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 443
Target Start/End: Complemental strand, 43805617 - 43805405
Alignment:
| Q |
231 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc |
330 |
Q |
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|||||||||| | || || ||||||||||||||| | ||||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| || | || |
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| T |
43805617 |
ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgccacgactgcaca |
43805518 |
T |
|
| Q |
331 |
acaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatga |
430 |
Q |
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| T |
43805517 |
ataatatacagtaaaagttcatcctcttgtttctccttgtagcggagaatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataa |
43805418 |
T |
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| Q |
431 |
tccacaaaccttt |
443 |
Q |
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|||| |||||||| |
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| T |
43805417 |
tccataaaccttt |
43805405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 433
Target Start/End: Original strand, 520028 - 520215
Alignment:
| Q |
246 |
acattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaa |
345 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| ||||| ||| |||||| ||||| |||||||| || |||| ||||||| ||| |
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| T |
520028 |
acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccattatttccgacaat |
520127 |
T |
|
| Q |
346 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc |
433 |
Q |
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| ||||||||| |||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||| |||||| |||| |
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| T |
520128 |
aattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc |
520215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 441
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
| Q |
346 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct |
441 |
Q |
| |
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||||| ||||||| |||||| ||||| |||||||| | |||||||| ||||||||| || ||||||||||||||||||| ||||| |||||| |
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| T |
51091205 |
agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct |
51091110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 437
Target Start/End: Original strand, 41195074 - 41195261
Alignment:
| Q |
250 |
tcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagat |
349 |
Q |
| |
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||||| |||||||||||||| |||||||| | || ||||| ||| || ||| ||||||||||| ||| || | |||| ||||||| ||| | | |
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| T |
41195074 |
tcttgtggattccaattccactcataaaaaaggcaagtttgaatagaaagtttactcaaactccacctccaagacatcaccattatttccgacaataatt |
41195173 |
T |
|
| Q |
350 |
catccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
437 |
Q |
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|||| |||| ||||| ||||| || ||||| | | ||| ||||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
41195174 |
catcaacatatttcaattcattccggaaaataatgtaatttctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa |
41195261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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