View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19100_low_6 (Length: 316)
Name: NF19100_low_6
Description: NF19100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19100_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 22807250 - 22807543
Alignment:
| Q |
6 |
caaaggcttaattggcatgtaatgaggtaataaacgaagaatgggataaatatctcaaaggggtttaacaaaggaataattatatcaaggtaagcttatt |
105 |
Q |
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| T |
22807250 |
caaaggcttaattggcttgtaattaggtaatatacaaagaatgggataaatagcttaaaggggcttaacaaaggaataataatatcagggtaggcttatt |
22807349 |
T |
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| Q |
106 |
ttgctgaaagtaggttataaaagaaaaatggcctagatcctttctgtacatgcatgtgaacaagtgcttcaagagtcaagacaaatcctggaagtaacta |
205 |
Q |
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| T |
22807350 |
tggctaaaagtaggttatgaaagaaagatggcgtatatcatttccgtacatgcatgtgaacaagtgtttcaagagtcaaggcaaaccctggaagtaacta |
22807449 |
T |
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| Q |
206 |
acagtatgagtgaattcacacaagaaacaacaaatgttggaagctcaaaaactcacaaggtttcatgttctatcacaaatgatgcacaatctagt |
300 |
Q |
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| T |
22807450 |
acagtatgagtgaattcacacaagaaacaacaaatgttggaagctcaaaaactcacaaggtttcatg-tctatcacaaatgatgcacaatctagt |
22807543 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 33320255 - 33320426
Alignment:
| Q |
64 |
aggggtttaacaaaggaataattatatcaaggtaagcttattttgctgaaagtaggttataaaagaaaaatggcctagatcctttctgtacatgcatgtg |
163 |
Q |
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||||| ||||| |||| ||||||| ||||||||| ||| |||| ||| |||||||||||| ||||||| |||||||| ||| ||| |||||||||||||| |
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| T |
33320255 |
aggggcttaactaagggataattacatcaaggtaggctgatttggctaaaagtaggttatgaaagaaagatggcctaaatcatttttgtacatgcatgtg |
33320354 |
T |
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| Q |
164 |
aacaagtgcttcaagagtcaagacaaatcctggaagtaactaacagtatgagtgaattcacacaagaaacaa |
235 |
Q |
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| T |
33320355 |
aaaaagtgctttaagacttaaggaaaacctcgaaagtaactaacaatatgagagaatccacaccataaacaa |
33320426 |
T |
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