View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19100_low_7 (Length: 203)
Name: NF19100_low_7
Description: NF19100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19100_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 34377524 - 34377699
Alignment:
| Q |
18 |
gagtgttaccaatggaattgtttgtcaatggcgtggccataatttgttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34377524 |
gagtgctaccaatggaattgtttgtcaatggtgtggccataatttgttcc-aagataggtctattttgatcattaaccaactcagcggaatcccttggtg |
34377622 |
T |
|
| Q |
118 |
ttctaacaatctcatctgtgacattttgtaaggcagaatggaacgaatttccttgtgccaagtgctgctgtctgtgc |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377623 |
ttctaacaatctcatccgtgacattttgtaaggcagaatggaacgaatttccttgtgccaagtgctgctgtctgtgc |
34377699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 35976078 - 35975909
Alignment:
| Q |
24 |
taccaatggaattgtttgtcaatggcgtggccataatttgttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35976078 |
taccaatggaattgtttgtcaatggcgtggccataatttgttcc-aagataggtctattttgatcattaaccaacttagcggaatctcttggtgttctaa |
35975980 |
T |
|
| Q |
124 |
caatctcatctgtgacattttgtaaggcagaatggaacgaatttccttgtgccaagtgctgctgtctgtgc |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
35975979 |
caatctcatctatgacattttgtaaggcagaatgatacgaatttccttgtgccaagtgcttctgtctgtgc |
35975909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 12879560 - 12879734
Alignment:
| Q |
18 |
gagtgttaccaatggaattgtttgtcaatggcgtggccataatttgttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| || ||||| |
|
|
| T |
12879560 |
gagtgttaccaatggaattgtttgtcaatgtcgtggccataatttgttcc-aagataggtctattttgatcattaaccaactcaacggaattccatggtg |
12879658 |
T |
|
| Q |
118 |
ttctaacaatctcatctgtgacattttgtaaggcagaatggaacgaatttccttgtgccaagtgctgctgtctgtg |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12879659 |
ttctaacaatctcatccgtgacattttgtaaggtagaaaggaacgaatttccttgttccaagtgttgctgtctgtg |
12879734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University