View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19101_high_1 (Length: 547)
Name: NF19101_high_1
Description: NF19101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19101_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 7 - 532
Target Start/End: Original strand, 30088438 - 30088965
Alignment:
| Q |
7 |
tatcataggtgtacaccagtttcttctatgattgctttgatgcttcttgttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaatggt |
106 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30088438 |
tatcataggtgtacactagtttcttctgtgattgctttgatgcttcttgttgatcatgatcatcaagtactagtgtttttgattttaaggaatgaatggt |
30088537 |
T |
|
| Q |
107 |
ggatttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtt |
206 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30088538 |
ggatttgaaccaatcatgatgatttgtgaagacttgaggaaagaaggatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtt |
30088637 |
T |
|
| Q |
207 |
aatagaagccaaagagaaattatgagaagaagttaaaactca--gttaggctccattgattatttttgcaaataaacaaagaaatgttgttttggctctt |
304 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30088638 |
aatagaagccaaagagaaattatgagaagaagtgaaaactcaaagttaggctccattgattatttttgccaataaacaaagaaatgttgttttggctctt |
30088737 |
T |
|
| Q |
305 |
gattcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcatgaattgtttagaaatttgaggatgatattaattctaag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30088738 |
gattcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcatgaattgtttagaaatttgaggatgatattaattctaag |
30088837 |
T |
|
| Q |
405 |
tgattgaacagatttattttgcttgagaattatttcgttcaaactaatctttggtcctttaagctttttatttttgctctacaactttggttattttagg |
504 |
Q |
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| T |
30088838 |
tgattgaacagatttattttgcttgagaattatttcgttcaaactaatctttggtcctttaagctttttatttttgctctacaactttggttattttagg |
30088937 |
T |
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| Q |
505 |
aaaccaagatacatttaatgttgctttt |
532 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
30088938 |
aaaccaagatacatttaatgttgctttt |
30088965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 30092396 - 30092900
Alignment:
| Q |
7 |
tatcataggtgtacaccagtttcttctatgattgctttgatgcttctt---gttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaat |
103 |
Q |
| |
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||||||||||||| || |||| ||||| ||||||| |||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
30092396 |
tatcataggtgtatactagttgcttctgtgattgcattgatgcttcttcttgttgatcatgatcatcaagcactaatgtttttgattttaaggaatgaat |
30092495 |
T |
|
| Q |
104 |
ggtggatttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaag |
203 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30092496 |
ggtagatttgaaccaatcatgatgatttgtgaagacttgaggaaagaaggatttgttcatatggattatatatgtggaagtctcagcattgctatgaaag |
30092595 |
T |
|
| Q |
204 |
gttaatagaagccaaagagaaattatgagaagaagttaaaactca--gttaggctccattgattatttttgcaaataaacaaagaaatgttgttttggct |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
30092596 |
gttaatagaagccaaagagaaattatgagaagaagtgaaaacataaagttaggctccattggttatttttgcaactaaacaaagaaatgttgttttggct |
30092695 |
T |
|
| Q |
302 |
cttgattcctcttatcatgcgattctataggatttttagagaatataaatgatgttaacattcatgaattgtttagaaatttgaggatgatattaattct |
401 |
Q |
| |
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||||||||||||| |||| |||| ||||||||||||||||||||| |||||||| |||||||| |||| ||| |||||||||| |||| |
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|
| T |
30092696 |
attgattcctctta-catgtgattatataggatttttagagaatatcaatgatgtagacattcataaattattt-----------gatgatattacttct |
30092783 |
T |
|
| Q |
402 |
aagtgattgaacagatttattttgcttgagaattatttcgttcaaa-ctaatctttggtcctttaagctttttatttttgctctacaactttggtta--t |
498 |
Q |
| |
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|| |||||||| | | || | |||||| | | | | ||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||| | |
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| T |
30092784 |
aaatgattgaagaaactt-tcttgcttaacagt-acttcgtccctctctaatctttggtcctttaagctttttatttttgtcctaagactttggttatgt |
30092881 |
T |
|
| Q |
499 |
tttaggaaaccaagataca |
517 |
Q |
| |
|
||||||||||||||||||| |
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| T |
30092882 |
tttaggaaaccaagataca |
30092900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 30098469 - 30098146
Alignment:
| Q |
8 |
atcataggtgtacaccagtttcttctatgattgctttgatgcttcttgttgatcatgaccatcaagtactagtgtttttgattttaaggaatgaatggtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | |||| | ||||| |||||| |||||||||||||||||||||||||||| |
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| T |
30098469 |
atcataggtgtacaccagtttcttctgtgattgctttgatgctt------ggtcataatcatcaggtactaatgtttttgattttaaggaatgaatggtg |
30098376 |
T |
|
| Q |
108 |
gatttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098375 |
gatttgaaccaatcatgatgagttgtgaagacttgaggaaagaatgatttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggtta |
30098276 |
T |
|
| Q |
208 |
atagaagccaaagagaaattatgagaagaagttaaaactca--gttaggctccattga--ttatttttgcaaataaacaaagaaatgttgttttggctct |
303 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||| || |||||||| |||||||||||||| | |||| ||||| |
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| T |
30098275 |
atagaaaccaaagagaaattatgagaagaagtgaaaacacattgttaggctccattgattttttttttgcatgtaaacaaagaaatggtttttttgctct |
30098176 |
T |
|
| Q |
304 |
tgattcctcttatcatgcgattctatagga |
333 |
Q |
| |
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||||| || |||||||| || | ||||||| |
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| T |
30098175 |
tgatttctattatcatgtgactatatagga |
30098146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 448 - 524
Target Start/End: Complemental strand, 39665966 - 39665890
Alignment:
| Q |
448 |
ctaatctttggtcctttaagctttttatttttgctctacaactttggttattttaggaaaccaagatacatttaatg |
524 |
Q |
| |
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|||||||||||| |||| ||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
39665966 |
ctaatctttggttcttttagctttttatttttgtcctgcaactttggttcttttaggaaaccaagatacaattaatg |
39665890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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