View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19101_high_4 (Length: 302)
Name: NF19101_high_4
Description: NF19101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19101_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 41898485 - 41898205
Alignment:
| Q |
14 |
taattaatataaagaatcttcacaattttgattctttaacatgcagaacaaatcactaaccccactnnnnnnngtgaagtttctattgtcccaaacagca |
113 |
Q |
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| T |
41898485 |
taattaatataaagaatcttcacaattttgattctttaacatgcagaacaaatcacta-ccccacttaaaaaagtgaagtttctattgtcccaaacagca |
41898387 |
T |
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| Q |
114 |
ccaaaattattaactcaattgatgtttcttcatnnnnnnntattcttgttaacaattccacatagagaaatatcaatctatactctacaagtttcctaca |
213 |
Q |
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| T |
41898386 |
ccaaaattattaacttaattgatgtttcttcataaaaaaatattcttgttaacaattccacatagaaaaatatcaatctatactctacaagtttcctaca |
41898287 |
T |
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| Q |
214 |
tctgaaactagacatagtttggattagagtgaaatataatcagaattaattagtgatggaaaaacaaatcctagtataatct |
295 |
Q |
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| T |
41898286 |
tctgaaactagacatagtttggattagagtgaaatataatcagaattaattagtgatggaaaaacaaatcctattataatct |
41898205 |
T |
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