View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19101_low_2 (Length: 376)
Name: NF19101_low_2
Description: NF19101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19101_low_2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 15182365 - 15182005
Alignment:
| Q |
16 |
aatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacac |
115 |
Q |
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| T |
15182365 |
aatattacccccatgccaagtgcaatgaccattcctaatgggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacac |
15182266 |
T |
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| Q |
116 |
tcctcattgataccacacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagttgtgat |
215 |
Q |
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| T |
15182265 |
tcctcattgataccacacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagttgtgat |
15182166 |
T |
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| Q |
216 |
gcctttataggtctaggttcaaatattgtggattaaagattaacaggttcaaattttacctcactaacatgttcttaattttcttaagtttgtacttacc |
315 |
Q |
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| T |
15182165 |
gcctttataggtctaggttcaaatattgtggattaaagattaacaggttcaaattttacatcactaacatgttcttaattttcttaagtttgtacttacc |
15182066 |
T |
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| Q |
316 |
gaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccct |
376 |
Q |
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| T |
15182065 |
gaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccct |
15182005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 15192306 - 15192179
Alignment:
| Q |
24 |
ccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcatt |
123 |
Q |
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| T |
15192306 |
ccccatgccaagtgcaatgaccactcttaaagggttgaacatagctacatatattggtccttttttacgaaatgcccatttgtttacaacactcctcaat |
15192207 |
T |
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| Q |
124 |
gataccacacaaattgcctataaatgaa |
151 |
Q |
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| T |
15192206 |
gataccacaaatattgcctataaatgaa |
15192179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 15211131 - 15210997
Alignment:
| Q |
16 |
aatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacac |
115 |
Q |
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| T |
15211131 |
aatattacccccatgctaagtgcaatgaccactcttaaaggtttgaacatagctacatatattggtcctttcttacgacatgcccatgtctgtataacat |
15211032 |
T |
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| Q |
116 |
tcctcattgataccacacaaattgcctataaatga |
150 |
Q |
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|| ||| |||| ||||| || |||||||||||||| |
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| T |
15211031 |
tcttcaatgattccacaaaagttgcctataaatga |
15210997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 15204845 - 15204728
Alignment:
| Q |
16 |
aatattacccc-cataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaaca |
114 |
Q |
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||||||||||| ||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
15204845 |
aatattaccccgcatgccaagtgcaatgaccactcttaaagggttgaaggtagctacatatattggtcctttcttacgacatgcccatgtgtttacaaca |
15204746 |
T |
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| Q |
115 |
ctcctcattgataccaca |
132 |
Q |
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| T |
15204745 |
ttccttaatgataccaca |
15204728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 15203977 - 15203910
Alignment:
| Q |
309 |
acttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccct |
376 |
Q |
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| T |
15203977 |
acttactgagtaacacacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccct |
15203910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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