View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19101_low_6 (Length: 222)
Name: NF19101_low_6
Description: NF19101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19101_low_6 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 6470 - 6650
Alignment:
| Q |
24 |
ttattcatattaacattacttggcatggttcacaaatgataatcaataactaattacaacagaggtataaacaaattaaaagtggatggattaacagaaa |
123 |
Q |
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| T |
6470 |
ttattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagaggtataaacaaattaaaagtggatggattaacagaaa |
6569 |
T |
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| Q |
124 |
agattgttcgtatcctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
6570 |
agattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaattcgtttcttgtattgagcaatg |
6650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 16793 - 16978
Alignment:
| Q |
23 |
attattcatattaa-cattacttggcatggttcacaaatgataatcaata---actaattacaacagag--gtataaacaaattaaaagtggatggatta |
116 |
Q |
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| T |
16793 |
attattcatattaaacattatttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaa----atggataa |
16888 |
T |
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| Q |
117 |
acagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
16889 |
acagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
16978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 27121 - 27306
Alignment:
| Q |
23 |
attattcatattaa-cattacttggcatggttcacaaatgataatcaata---actaattacaacagag--gtataaacaaattaaaagtggatggatta |
116 |
Q |
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| T |
27121 |
attattcatattaaacattaattatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaa----atggataa |
27216 |
T |
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| Q |
117 |
acagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
27217 |
acagaaaataatgttcgtatatcctactgatcaggttgaccttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
27306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 37911954 - 37911771
Alignment:
| Q |
23 |
attattcatattaacattacttggcatggttcacaaatgataatcaataactaattacaacagaggtataaacaaattaaaagtggatggattaacagaa |
122 |
Q |
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| T |
37911954 |
attattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagaggtataaacaaattaaaagtggatggattaacagaa |
37911855 |
T |
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| Q |
123 |
aagattgttcg--tatcctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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|| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37911854 |
aataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
37911771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 37882005 - 37881826
Alignment:
| Q |
23 |
attattcatattaacattacttggcatggttcacaaatgataatcaataactaattacaacagag--gtataaacaaattaaaagtggatggattaacag |
120 |
Q |
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| T |
37882005 |
attattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagagaagtacatacaaattaaaa----atggataaacag |
37881910 |
T |
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| Q |
121 |
aaaagattgttcgtatcctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
37881909 |
aaaataatgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
37881826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 37855783 - 37855598
Alignment:
| Q |
23 |
attattcatattaa-cattacttggcatggttcacaaatgataatcaata---actaattacaacagag--gtataaacaaattaaaagtggatggatta |
116 |
Q |
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| T |
37855783 |
attattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaa----atggataa |
37855688 |
T |
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| Q |
117 |
acagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
37855687 |
acagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
37855598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 37867971 - 37867786
Alignment:
| Q |
23 |
attattcatattaa-cattacttggcatggttcacaaatgataatcaata---actaattacaacagag--gtataaacaaattaaaagtggatggatta |
116 |
Q |
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| T |
37867971 |
attattcatattaaacattatttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaa----atggataa |
37867876 |
T |
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| Q |
117 |
acagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaattttagattcagaaatacgtttcttgtattgagcaatg |
204 |
Q |
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| T |
37867875 |
acagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
37867786 |
T |
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