View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19102_high_1 (Length: 467)
Name: NF19102_high_1
Description: NF19102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19102_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 95 - 460
Target Start/End: Complemental strand, 42144075 - 42143710
Alignment:
| Q |
95 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
194 |
Q |
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| T |
42144075 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
42143976 |
T |
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| Q |
195 |
attttgtctcattcgtgaattgtttgataattgatgatactaagctcggactttgtattgctaaactttgacacaccttctgtttannnnnnnnnnnnnn |
294 |
Q |
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| T |
42143975 |
attttgtctcattcgtgaattgtttgataactgatgatactaagcttggactttgtattgctaaactttgacacaccttctgtttattttttattttttt |
42143876 |
T |
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| Q |
295 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctgagatttatttaagggtttgacctcttctaaaatannnnnnnnat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
42143875 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctcagatttatttaagggtttgacctcttctaaaatattttttttat |
42143776 |
T |
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| Q |
395 |
tcacagtagtcagggtcaaacctctgaccaaataattaacgagcccgagtatctatgatctgtgct |
460 |
Q |
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| T |
42143775 |
tcacagtagtcagggccaaacctcggaccaaatgattaacgagcccaagtatctatgatctgtgct |
42143710 |
T |
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