View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19102_high_9 (Length: 238)

Name: NF19102_high_9
Description: NF19102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19102_high_9
NF19102_high_9
[»] chr2 (5 HSPs)
chr2 (18-238)||(11724007-11724227)
chr2 (18-238)||(11593763-11593985)
chr2 (18-238)||(11605679-11605901)
chr2 (32-238)||(11613106-11613303)
chr2 (33-238)||(11687672-11687882)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 11724227 - 11724007
Alignment:
Q  18 actaattgatataattaacatactaatcacttcttgtatatgttatgatcaagaatgctactcaaaaggaagttaacgcttctattcgagctgaaattca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11724227 actaattgatataattaacatactaatcacttcttgtatatgttatgatcaagaatgctactcaaaaggaagttaacgctgcttttcgagctgaaattca 11724128  T
Q  118 aatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11724127 aatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggtttgaaaatcaa 11724028  T
Q  218 cttctgaaagaaaatgtgagt 238  Q
    |||||||||||||| ||||||    
T  11724027 cttctgaaagaaaaggtgagt 11724007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11593763 - 11593985
Alignment:
Q  18 actaattgatataattaacatactaatcacttcttgtatatgttatgatc--aagaatgctactcaaaaggaagttaacgcttctattcgagctgaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||    
T  11593763 actaattgatataattaacatactaatcacttcttgtatatgttatgatctcaagaatgctactcaaaaggaagttaacgctgcttttcgagctgaaatt 11593862  T
Q  116 caaatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11593863 caaatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatg 11593962  T
Q  216 aacttctgaaagaaaatgtgagt 238  Q
    |||||||||||||||| ||||||    
T  11593963 aacttctgaaagaaaaggtgagt 11593985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11605679 - 11605901
Alignment:
Q  18 actaattgatataattaacatactaatcacttcttgtatatgttatgatc--aagaatgctactcaaaaggaagttaacgcttctattcgagctgaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||    
T  11605679 actaattgatataattaacatactaatcacttcttgtatatgttatgatctcaagaatgctactcaaaaggaagttaacgctgcttttcgagctgaaatt 11605778  T
Q  116 caaatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11605779 caaatgcttttggaagagaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatg 11605878  T
Q  216 aacttctgaaagaaaatgtgagt 238  Q
    |||||||||||||||| ||||||    
T  11605879 aacttctgaaagaaaaggtgagt 11605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 11613106 - 11613303
Alignment:
Q  32 ttaacatactaatcacttcttgtatatgttatgatcaagaatgctactcaaaaggaagttaacgcttctattcgagctgaaattcaaatgcttttggaag 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||   |||| |||||||||     
T  11613106 ttaacatactaatcacttcttgtatatgttatgatcaagaatgctactcaaaaggaagttaacgctgctcttcgagctgaaaaagaaattcttttggaaa 11613205  T
Q  132 agaaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatcaacttctgaaagaaaa 231  Q
     |         ||||| |||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11613206 tg---------atggaaagacaaaagaatgtattttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatgaacttctgaaagaaaa 11613296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 11687672 - 11687882
Alignment:
Q  33 taacatactaatcacttcttgtatatgttatgatc--aagaatgctactcaaaaggaagttaacgcttctattcgagctgaaattcaaatgcttttggaa 130  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||  | ||  | |||||||||| || |||||| ||||||| ||||||||| ||||    
T  11687672 taacatactaatcacttcttgtatatgttatgatctcaagaatgctatcccaatagcagttaacgctgctcttcgaggtgaaattgaaatgctttcggaa 11687771  T
Q  131 gagaaaagggaaatg---gagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatcaacttctgaaag 227  Q
    ||||||| |||||||   ||||||||  | |    || ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  11687772 gagaaaatggaaatgatggagagacaggagaatacattttgccaagcatgccgtgattcacatttgaaataacttcggcttgaaaatgaacttctgaaag 11687871  T
Q  228 aaaatgtgagt 238  Q
    |||| ||||||    
T  11687872 aaaaggtgagt 11687882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University