View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19102_low_3 (Length: 459)
Name: NF19102_low_3
Description: NF19102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19102_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 34645703 - 34646145
Alignment:
| Q |
1 |
gaaattcaaatttcaccaacgaaaactataagaaaggaggaacctcgacaagatgagaggatatacaaacatatggtatggaaaatctcaaatttaatgt |
100 |
Q |
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| T |
34645703 |
gaaattcaaatttcagcaacgaaaactataagaaaggagaaacctcgacaagatgagaggatattcaaacatatggtatggaaaatctcaaatttaatgt |
34645802 |
T |
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| Q |
101 |
tatgattgtcagaagtttggtcattatgcttcaaaatgtagatttgccaagaatagggtcgacgagaagaccaactatgtagaagaaaaggatgagaagt |
200 |
Q |
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| T |
34645803 |
tatgattgtcagaagtttggtcattatgcttcaaaatgtagatttgccaagaatagggtcgacgagaagaccaactatgtagaagaaaaggatgagaagt |
34645902 |
T |
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| Q |
201 |
tttaaatagttctggcagcacatggaagtatcaaaggaaccttacaaaattcatggtatattgacactggtgcaagcaaccatatgtgtggaaataggag |
300 |
Q |
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| T |
34645903 |
tttaaatagttctggcagcacatggaagtatcgaaggaaccttacaaaattcatggtatattgacactcgtgcaagcaaccatatgtgtggaaataggag |
34646002 |
T |
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| Q |
301 |
catgttcgtgaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaagattccaataaaaggcaaaggcaatatcttaattctcttg |
400 |
Q |
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| T |
34646003 |
catgttcgtaaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaagattccaataaaaggcaagggcaatatcttaattctctta |
34646102 |
T |
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| Q |
401 |
aaatgtcgaagacatcaattttctttaaatatttactactttc |
443 |
Q |
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| T |
34646103 |
aaatgtggaagacatcaattttctttaaatatttactactttc |
34646145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 421
Target Start/End: Complemental strand, 4890660 - 4890500
Alignment:
| Q |
261 |
ttgacactggtgcaagcaaccatatgtgtggaaataggagcatgttcgtgaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaa |
360 |
Q |
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| T |
4890660 |
ttgacactggtgcaagcaatcatatgtgtgggaaaaggagcatgtttgtagagcttgatgaatcagtgtgtggcaatgtctcatttggcgatgattccaa |
4890561 |
T |
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| Q |
361 |
gattccaataaaaggcaaaggcaatatcttaattctcttgaaatgtcgaagacatcaattt |
421 |
Q |
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| T |
4890560 |
gattccagtgaaaaacaaatgtaatatcttaattcgcttgaaagatggaagacatcaattt |
4890500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 40846297 - 40846394
Alignment:
| Q |
277 |
caaccatatgtgtggaaataggagcatgttcgtgaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaagattccaataaaag |
374 |
Q |
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| T |
40846297 |
caaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgatcccaaggttctaatgaaag |
40846394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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