View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19102_low_5 (Length: 398)
Name: NF19102_low_5
Description: NF19102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19102_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 7101055 - 7100680
Alignment:
| Q |
6 |
atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatggctgtttgacatgaattaattatatcatcttatcttatgtat |
105 |
Q |
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| T |
7101055 |
atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatagctgtttgacatgaattaactatatcatcttatcttatgtag |
7100956 |
T |
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| Q |
106 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatcagtttgacatcggaatttcaatgttctgt |
205 |
Q |
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| T |
7100955 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtgtatctgtttgacatcggaatttcaatgttttgt |
7100856 |
T |
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| Q |
206 |
tcctcaaagt--gacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctctatctcgaaaga |
303 |
Q |
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| T |
7100855 |
tcctcaacgtgagacaagtatgatgtctttgttagctttagaggtctagatatccttgaaggttttcttagccatttggttgaagctttatctcgaaaga |
7100756 |
T |
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| Q |
304 |
aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaac |
379 |
Q |
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| T |
7100755 |
aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcacttcttgaaactattgaaac |
7100680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 184 - 379
Target Start/End: Complemental strand, 7087263 - 7087068
Alignment:
| Q |
184 |
catcggaatttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggt |
283 |
Q |
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| T |
7087263 |
catcggaatttcaatgttcagttcctcaaagtgacaagcatgatgtctttgttagctttagaggtctggacatccgtgaaggttttcttagtcatttggt |
7087164 |
T |
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| Q |
284 |
tgaagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaac |
379 |
Q |
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| T |
7087163 |
tgaagctttatctcgaaaggaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcactttttgaagctattgaaac |
7087068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 379
Target Start/End: Complemental strand, 7070189 - 7070002
Alignment:
| Q |
192 |
tttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctc |
291 |
Q |
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| T |
7070189 |
tttcaatcttctgttcctcaaattcacaagtatgatgtctttgttagctttcggggtccagatatccgtgaagtttttcttcctcatttgattaaagctt |
7070090 |
T |
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| Q |
292 |
tatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaac |
379 |
Q |
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| T |
7070089 |
tttctcaaaagaaaattgtttactttgtagactataagcttacaaaaggaaatgaaatatcacagtcactttttgaagcaattgaaac |
7070002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 7087389 - 7087320
Alignment:
| Q |
106 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttat |
175 |
Q |
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| T |
7087389 |
agtagagacacaaaggaagatccacaatgcacaatattaatcttgtattttttgtttgtctcttgtttat |
7087320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 7070331 - 7070253
Alignment:
| Q |
95 |
atcttatgtatagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatc |
176 |
Q |
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| T |
7070331 |
atcttatgtagagtagagagacaaaggaaaatccacaatgcac---attaatcgtgcattttttgtttgtcttttgtttatc |
7070253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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