View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19102_low_6 (Length: 338)

Name: NF19102_low_6
Description: NF19102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19102_low_6
NF19102_low_6
[»] chr1 (11 HSPs)
chr1 (1-338)||(9377447-9377784)
chr1 (4-331)||(9236452-9236779)
chr1 (46-322)||(9437855-9438131)
chr1 (46-322)||(9420772-9421048)
chr1 (41-320)||(8979282-8979561)
chr1 (40-220)||(8926798-8926978)
chr1 (40-212)||(8962159-8962331)
chr1 (40-167)||(8939277-8939404)
chr1 (88-182)||(9466862-9466956)
chr1 (52-329)||(8861893-8862170)
chr1 (235-320)||(9125654-9125739)
[»] chr3 (1 HSPs)
chr3 (36-311)||(9171253-9171528)
[»] chr6 (1 HSPs)
chr6 (36-182)||(15910469-15910615)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 9377784 - 9377447
Alignment:
Q  1 ccaagaaaaacatcattgttctctggtggcgccaagaatttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377784 ccaagaaaaacatcattgttctccggtggcgccaagaatttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcac 9377685  T
Q  101 agaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377684 agaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcac 9377585  T
Q  201 cttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattctttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377584 cttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattctttta 9377485  T
Q  301 atatcagcataagtaaatcttgttggtttcattgctct 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9377484 atatcagcataagtaaatcttgttggtttcattgctct 9377447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 9236452 - 9236779
Alignment:
Q  4 agaaaaacatcattgttctctggtggcgccaagaatttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacaga 103  Q
    |||||||| || |||||||||||||| || ||||| || ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  9236452 agaaaaacttccttgttctctggtggtgctaagaagttctgcaaggagccattcggaaagaaatcatagacaagagcacggtggaatccatcagcacaaa 9236551  T
Q  104 atccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcacctt 203  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  9236552 atccgagtaagcgaacaacattgacatgatgaatttttcccatagttccgacttcgttgatgaaatcgtttccatctccttgtgtttcattgagaacctt 9236651  T
Q  204 cacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaata 303  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| | || || || |||||||||||||| ||||||    
T  9236652 cacagcaaccaaaatttcttgggagagcatgcctttgaacacggatccatgagctccttctcctaaactctctttgaagccatttgttattctcttaata 9236751  T
Q  304 tcagcataagtaaatcttgttggtttca 331  Q
    ||||||||||| |||||||| |||||||    
T  9236752 tcagcataagtgaatcttgtaggtttca 9236779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 9437855 - 9438131
Alignment:
Q  46 aacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttccca 145  Q
    ||||| |||||||||||||||| ||| ||||||||||||| | ||||||| || || ||||| | |||||||||||||||||  ||||||||||||||||    
T  9437855 aacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttccca 9437954  T
Q  146 tagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatac 245  Q
    ||| |   ||||| || ||||| || |||||||| || |  || |  || |||| ||||||||| || | |||||| |  ||||   | |||||||| ||    
T  9437955 tagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatttcattagataatttacctttgaaaac 9438054  T
Q  246 ggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatcttg 322  Q
     || |||||||||||||| ||||| | |||| |||||  |||||| || || || |||||||||||||  |||||||    
T  9438055 tgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcagcataagagaatcttg 9438131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 9420772 - 9421048
Alignment:
Q  46 aacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttccca 145  Q
    ||||| |||||||||||||||| ||| ||||||||||||| | ||||||| || || ||||| | |||||||||||||||||  ||||||||||||||||    
T  9420772 aacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttccca 9420871  T
Q  146 tagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatac 245  Q
    ||| |   ||||| || ||||| || |||||||| || |  || |  || |||| ||||||||| || | |||||| |  ||||   | |||||||| ||    
T  9420872 tagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatttcattagataatttacctttgaaaac 9420971  T
Q  246 ggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatcttg 322  Q
     || |||||||||||||| ||||| | |||| |||||  |||||| || || || |||||| ||||||  |||||||    
T  9420972 tgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcaacataagagaatcttg 9421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 320
Target Start/End: Original strand, 8979282 - 8979561
Alignment:
Q  41 tttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttt 140  Q
    |||| ||||| || |||| ||| ||||  ||||||||| |||| || | ||| || |||||||| || ||||| |||||||||||||  || || |||||    
T  8979282 tttgtaacgaaccctttgaaaataaattgtagacaagaacacgatgaattccctctgcacagaagccaagcaatcgaacaacattgatgtggtggatttt 8979381  T
Q  141 tcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaatttcttgggatagcatgcctttg 240  Q
    ||||||| |||  |||||  | ||||| || || || ||||||| ||| |  ||||| | |||||||||||||| ||| || |  || ||  | |||||     
T  8979382 tcccataattcccacttcgctaatgaactctttcccgtctccttctgtattgttgagaatcttcacagcaaccagaatctcatttgagagttttccttta 8979481  T
Q  241 aatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatct 320  Q
    |||||   ||| ||||||||||||||||  ||||||||||| |||||||| |||||||| ||||||||| ||| ||||||    
T  8979482 aatacttttccgtgagctccttctcctagtttttccttaaacccatttgtgattctttttatatcagcaaaagaaaatct 8979561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 8926978 - 8926798
Alignment:
Q  40 ttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaattt 139  Q
    ||||||||||| ||||| || || || ||||| || |||||||| |  |||||||| ||||| || || ||||| ||||||||||| | |||||| ||||    
T  8926978 ttttgcaacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaaagccaagcaaccgaacaacattaacatgatggattt 8926879  T
Q  140 ttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaattt 220  Q
    ||||||||||||  || ||||| ||||| ||  | |||||||| | ||| | | | |||| |||||||||||||| |||||    
T  8926878 ttcccatagttcccacctcatttatgaactcactcccatctccctctgtattactaagcatcttcacagcaaccataattt 8926798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 8962331 - 8962159
Alignment:
Q  40 ttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaattt 139  Q
    ||||||||||| ||||| || || || ||||| || | |||||| |  ||||||||||| || || || || || || |||||||| | |||||| ||||    
T  8962331 ttttgcaacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaaagccaagtaaccggacaacattaacatgatggattt 8962232  T
Q  140 ttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaac 212  Q
    ||||||||||||  |||||||| ||||| ||  | |||||||||| ||| | ||| |||| ||||||||||||    
T  8962231 ttcccatagttcctacttcatttatgaactctctcccatctccttctgtattattaagcatcttcacagcaac 8962159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 8939404 - 8939277
Alignment:
Q  40 ttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaattt 139  Q
    |||||||| || |||||||| || || ||||| || | |||||| |  |||||||| ||||| || || ||||| || |||||||| | |||||||||||    
T  8939404 ttttgcaatgaaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaaagccaagcaaccggacaacattaacatgatgaattt 8939305  T
Q  140 ttcccatagttcggacttcattgatgaa 167  Q
    ||||||||||||  |||||||| |||||    
T  8939304 ttcccatagttcccacttcatttatgaa 8939277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 9466862 - 9466956
Alignment:
Q  88 aatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctcc 182  Q
    ||||||||||| ||||| || ||||| || |||||||| | |||||| ||||||||||||||||  |||||||| ||||| || || ||||||||    
T  9466862 aatccatcagcgcagaagccaagcaaacggacaacattaagatgatggatttttcccatagttcccacttcatttatgaactccttaccatctcc 9466956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 8861893 - 8862170
Alignment:
Q  52 ccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttc 151  Q
    ||||||||||| ||||  ||||||||||| ||||| | |||||| || ||||| || ||||| ||||| || ||||  || || ||||| |||||| |||    
T  8861893 ccatttggaaataaattgtagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccataattc 8861992  T
Q  152 ggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctcc 251  Q
      |||||||||||||| || || || ||||| | |||  ||||||| |  ||||| || ||   ||| ||    || ||| | ||||| || || | |||    
T  8861993 ccacttcattgatgaactctttcccttctccctctgtaccattgaggattttcaccgccacatgaatctcactcgagagctttcctttaaacacagttcc 8862092  T
Q  252 atgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatcttgttggttt 329  Q
     ||||||||||||||||  |||||||| || || ||||| |||||||| ||||| ||||||| |||||| || |||||    
T  8862093 gtgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataagaaaatctagtaggttt 8862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 9125654 - 9125739
Alignment:
Q  235 cctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatct 320  Q
    ||||| || |||| ||| || |||||||||||||| ||||||||||| ||| | || |||||||| ||||||| ||| | ||||||    
T  9125654 cctttaaacacggttccgtgtgctccttctcctaacttttccttaaacccactagtgattctttttatatcagaatatgaaaatct 9125739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 9171528 - 9171253
Alignment:
Q  36 gaatttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatga 135  Q
    |||||| ||||| || |||||||| || ||||||||||| |||||||| || |||||||| || || || || ||||| || |||||||| | ||| ||     
T  9171528 gaatttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagatggtgg 9171429  T
Q  136 atttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaaccaaaatttcttgggatagcatgc 235  Q
    ||||| ||||||||||  |||||||| ||||| || || |||||||| | ||| | ||| |||| ||| ||| |||| | |||||     ||||   | |    
T  9171428 attttgcccatagttcccacttcatttatgaactccttcccatctccctctgtgttatttagcatcttaacaccaactagaatttggcttgataatttac 9171329  T
Q  236 ctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcata 311  Q
    ||||| | || ||||||||||||||||| ||||| || ||||||||   |||||| ||||| || || ||||||||    
T  9171328 ctttgtaaacagctccatgagctccttcgcctaacttatccttaaatttatttgtgattctctttatgtcagcata 9171253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 15910469 - 15910615
Alignment:
Q  36 gaatttttgcaacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatga 135  Q
    ||||||||| ||||| ||||||||||| || ||||| || | |||||| || || ||||| |  || || |||||||| ||||| ||||||| ||| ||     
T  15910469 gaatttttgtaacgaaccatttggaaaaaagtcataaactaaagcacgatgaaaaccatctgagcaaaagccgagcaaacgaacgacattgagatggtgg 15910568  T
Q  136 atttttcccatagttcggacttcattgatgaaatcgtttccatctcc 182  Q
    ||||| ||||| ||||  |||||||| ||||| || || ||||||||    
T  15910569 attttgcccatggttcccacttcatttatgaattccttcccatctcc 15910615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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