View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_112 (Length: 265)

Name: NF19103_high_112
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_112
NF19103_high_112
[»] chr5 (3 HSPs)
chr5 (15-165)||(12709400-12709548)
chr5 (15-165)||(12770650-12770798)
chr5 (89-154)||(35584020-35584085)
[»] chr8 (6 HSPs)
chr8 (88-165)||(5793477-5793554)
chr8 (89-165)||(8545469-8545545)
chr8 (89-163)||(29918501-29918575)
chr8 (89-163)||(17108268-17108344)
chr8 (89-165)||(6388625-6388701)
chr8 (89-165)||(36274935-36275010)
[»] scaffold0157 (1 HSPs)
scaffold0157 (89-154)||(14761-14826)
[»] chr4 (7 HSPs)
chr4 (89-154)||(12505651-12505716)
chr4 (89-165)||(21714096-21714172)
chr4 (95-152)||(7334310-7334367)
chr4 (89-134)||(36919052-36919097)
chr4 (86-163)||(39086056-39086133)
chr4 (89-129)||(37384207-37384247)
chr4 (89-129)||(42907821-42907861)
[»] chr7 (2 HSPs)
chr7 (97-165)||(6557854-6557922)
chr7 (88-149)||(31345439-31345500)
[»] chr2 (5 HSPs)
chr2 (89-164)||(35248501-35248576)
chr2 (89-140)||(13531867-13531918)
chr2 (89-134)||(25210301-25210346)
chr2 (89-134)||(30696848-30696893)
chr2 (89-129)||(31600888-31600928)
[»] chr6 (2 HSPs)
chr6 (89-165)||(10925563-10925639)
chr6 (95-152)||(34346140-34346197)
[»] chr1 (3 HSPs)
chr1 (89-154)||(42729064-42729129)
chr1 (89-165)||(39219151-39219227)
chr1 (87-135)||(43513147-43513195)
[»] chr3 (1 HSPs)
chr3 (89-154)||(37032218-37032283)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 12709548 - 12709400
Alignment:
Q  15 agagatataaatactcatcttgaactcatacttaaatatacttcaaatgtnnnnnnnntcaatttatctttcctttttacataaatagaaattcaaacac 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||| |||||||||||||||||||||||||| |    
T  12709548 agagatataaatactcatcttgaactcatacttaaatatgcttcaaatgtaaaaaa--tcaatttatcttttctttttacataaatagaaattcaaaccc 12709451  T
Q  115 taaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12709450 taaatcatttcactcgtacaaccaaagtctcagtctttcaaacgacactca 12709400  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 12770798 - 12770650
Alignment:
Q  15 agagatataaatactcatcttgaactcatacttaaatatacttcaaatgtnnnnnnnntcaatttatctttcctttttacataaatagaaattcaaacac 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||| |||||||||||||||||||||||||| |    
T  12770798 agagatataaatactcatcttgaactcatacttaaatatgcttcaaatgtaaaaaa--tcaatttatcttttctttttacataaatagaaattcaaaccc 12770701  T
Q  115 taaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  12770700 taaatcatttcactcgtacaaccaaagtctcggtctttcaaacgacactca 12770650  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 35584085 - 35584020
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 154  Q
    ||||| ||||||||||| |||||| |||||||||||  ||| ||||  || |||||||||||||||    
T  35584085 ttttatataaatagaaactcaaaccctaaatcattttgctcacacagtcagagtctcagtctttca 35584020  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 5793554 - 5793477
Alignment:
Q  88 tttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  5793554 tttttatataaatagaaactcaaaccctaaatcatttcactcacacaaccaaagtctaagtctttctgacgacactca 5793477  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 8545469 - 8545545
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| ||||| |||||| ||||| ||||||||||||||||  | | ||| |||||| |||||||||| ||||||||    
T  8545469 ttttatataaacagaaatccaaaccctaaatcatttcactcaaatagccagagtctcggtctttcaaatgacactca 8545545  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 29918575 - 29918501
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacact 163  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||   | ||||||| ||||||| | ||||||    
T  29918575 ttttatataaatagaaactcaaaccctaaatcatttcactcacacagttagagtctcaatctttcagatgacact 29918501  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 17108344 - 17108268
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaa--gtctcagtctttcaaacgacact 163  Q
    ||||| ||||||||||| | |||| |||||| ||||||||| ||||| ||||  ||||| || ||||||||||||||    
T  17108344 ttttatataaatagaaacttaaaccctaaataatttcactcacacaatcaaagtgtctcggtatttcaaacgacact 17108268  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 6388625 - 6388701
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| ||||| |||||  ||||| |||||||||||||||| |||||  | |||||||| |||| ||| ||||||||    
T  6388625 ttttatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtctcagactttaaaatgacactca 6388701  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 36275010 - 36274935
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| |||||||||||  ||| | |||||||||||||||| ||||  ||||||||| |||||||| | ||||||||    
T  36275010 ttttatataaatagaaacccaacc-ctaaatcatttcactcacacagtcaaagtctcggtctttcagatgacactca 36274935  T

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Target: scaffold0157 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 14826 - 14761
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 154  Q
    ||||| ||||||||||| | ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  14826 ttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtctcagtctttca 14761  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 12505651 - 12505716
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 154  Q
    ||||| ||||||||||| | ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  12505651 ttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtctcagtctttca 12505716  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 21714096 - 21714172
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| ||||||||||| |||||| |||||||||||||||  |||||  | ||||||||||| ||||| ||||||||    
T  21714096 ttttatataaatagaaactcaaaccctaaatcatttcacttacacaattagagtctcagtctctcaaatgacactca 21714172  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 7334310 - 7334367
Alignment:
Q  95 ataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtcttt 152  Q
    ||||||||||| |||||| |||||||||||||||| ||||   |||||||||||||||    
T  7334310 ataaatagaaactcaaactctaaatcatttcactcacacagttaaagtctcagtcttt 7334367  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 36919097 - 36919052
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 134  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  36919097 ttttatataaatagaaactcaaactctaaatcatttcactcacaca 36919052  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 39086133 - 39086056
Alignment:
Q  86 cctttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacact 163  Q
    |||||||| ||||||||||| | |||| |||||||||||||||| ||||  || | ||||||| ||||| | ||||||    
T  39086133 cctttttatataaatagaaacttaaaccctaaatcatttcactcacacagtcagactctcagtttttcagatgacact 39086056  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 37384247 - 37384207
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactc 129  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  37384247 ttttatataaatagaagttcaaaccctaaatcatttcactc 37384207  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 42907861 - 42907821
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactc 129  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  42907861 ttttatataaatagaaactcaaaccctaaatcatttcactc 42907821  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 6557854 - 6557922
Alignment:
Q  97 aaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||||||  |||||| |||||||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  6557854 aaatagaatctcaaactctaaatcatttcactcacacaatcaaagtctcagtctttcagatgacactca 6557922  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 31345500 - 31345439
Alignment:
Q  88 tttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtc 149  Q
    |||||| ||||||||||| |||||| ||| |||||||||||| ||||| |||||||||||||    
T  31345500 tttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtc 31345439  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 35248501 - 35248576
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactc 164  Q
    ||||| ||||||||||| | |||| |||||||||||||||| ||||  || ||||||||||||||||| |||||||    
T  35248501 ttttatataaatagaaaatgaaaccctaaatcatttcactcacacagacagagtctcagtctttcaaatgacactc 35248576  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 13531918 - 13531867
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaa 140  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  13531918 ttttatataaatagaaactcaaaccctaaatcatttcactcacacaatcaaa 13531867  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 25210346 - 25210301
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 134  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  25210346 ttttatataaatagaaactcaaaccctaaatcatttcactcacaca 25210301  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 30696893 - 30696848
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 134  Q
    ||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  30696893 ttttatataaatagaaattcaaaccctaaatcatgtcactcacaca 30696848  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 31600888 - 31600928
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactc 129  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  31600888 ttttatataaatagaaactcaaactctaaatcatttcactc 31600928  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 10925563 - 10925639
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| ||||||||||  | |||| |||||||||||||||  ||||| |||||| | ||||||||||||||||||||    
T  10925563 ttttatataaatagaatctgaaaccctaaatcatttcactaacacaatcaaagttttagtctttcaaacgacactca 10925639  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 34346140 - 34346197
Alignment:
Q  95 ataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtcttt 152  Q
    |||||||||||  ||||| |||||||||||||||| ||||  || |||||||||||||    
T  34346140 ataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctcagtcttt 34346197  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 42729064 - 42729129
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 154  Q
    ||||| ||||||||||| | | ||||||||||||||||||| ||||  || |||||||||||||||    
T  42729064 ttttatataaatagaaacttatacactaaatcatttcactcacacagtcagagtctcagtctttca 42729129  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 39219227 - 39219151
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 165  Q
    ||||| ||||||||||| |||||| |||||||||||| ||| ||||  || ||||||| | ||||| | ||||||||    
T  39219227 ttttatataaatagaaactcaaaccctaaatcatttcgctcacacagtcacagtctcattttttcatatgacactca 39219151  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 43513147 - 43513195
Alignment:
Q  87 ctttttacataaatagaaattcaaacactaaatcatttcactcgcacaa 135  Q
    ||||||| ||||||||||| |||||| |||||| |||||||||| ||||    
T  43513147 ctttttatataaatagaaactcaaaccctaaataatttcactcgtacaa 43513195  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 37032218 - 37032283
Alignment:
Q  89 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 154  Q
    ||||| ||||||| ||| |||||| ||||||||||||||||  |||| || |||||| ||||||||    
T  37032218 ttttatataaataaaaactcaaaccctaaatcatttcactcatacaatcagagtctcggtctttca 37032283  T

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