View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_115 (Length: 259)
Name: NF19103_high_115
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_115 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 21557655 - 21557419
Alignment:
| Q |
17 |
tgtatatgattgaaaaacaaggaacgtgaggaatcactgctttgaatctcaatcagttctcnnnnnnncttatttattcatgaaagctttaaagctcatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21557655 |
tgtatatgattgaaaaacaaggaacgtgaggaatcactgctttgaatctcaatcagttctctttttttcttatttattcatgaaagctttaaagctcatg |
21557556 |
T |
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| Q |
117 |
cactctatagtatacataataatttatttatattcttctgacttaatttcttgaaatacaaaagtcatctagtatttttattaattcagaccaagtcatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21557555 |
cactctatagtatacataataatttatttatattcttctgacttaatttcttgaaatgcaaaagtcatctagtattttcattaattcagaccaagtcatg |
21557456 |
T |
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| Q |
217 |
tcaatacacttgatgtatgtttgatttcacttttgaaagtgtt |
259 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
21557455 |
tca------gtgatgtatgtttgatttcacttttgaaagtgtt |
21557419 |
T |
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