View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_116 (Length: 257)
Name: NF19103_high_116
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_116 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9334712 - 9334557
Alignment:
| Q |
1 |
aacaatagttgcattttttgtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctaatgtaaattgtaaagtatccaat |
100 |
Q |
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| T |
9334712 |
aacaatagttgcatttttggtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctagtgtaaattgtaaagtatccaat |
9334613 |
T |
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| Q |
101 |
tctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgtaaa |
156 |
Q |
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| T |
9334612 |
tctctctttctttcttttttcctgtaggaaaaagatttggaagcaggactcgtaaa |
9334557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 9941290 - 9941136
Alignment:
| Q |
54 |
ttgatttattatattctcctcctaatgtaaattgtaaagtatccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgt |
153 |
Q |
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| T |
9941290 |
ttgatttgttatattctcctcctaatgtaaattgtaatgtatccaattctctc--tctttcttt----ctgtagaaaaaagagtgggaagcagaagttgt |
9941197 |
T |
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| Q |
154 |
aaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg |
214 |
Q |
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| T |
9941196 |
aaatgttacgggaacagcaaagccaagccgcagaataaggtagatatctgaattttcagtg |
9941136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 9334562 - 9334502
Alignment:
| Q |
182 |
cgtaaaataacgtagatatatggattttcagtgatcctctccatgttttactctaattcct |
242 |
Q |
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| T |
9334562 |
cgtaaaataaggtagatatatggattttcagtgatcctctccatgttttactctaattcct |
9334502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 8207699 - 8207599
Alignment:
| Q |
114 |
cttttttcctgtaggaaaaagatttggaagcaggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagt |
213 |
Q |
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| T |
8207699 |
ctttttttctgtagaaaaaagagttggaagcggaagttgtaaatgttaccggaacagcaaagccaagccgcaaaataaggtagatatctgagttttcagt |
8207600 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
8207599 |
g |
8207599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 8207748 - 8207707
Alignment:
| Q |
53 |
tttgatttattatattctcctcctaatgtaaattgtaaagta |
94 |
Q |
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| T |
8207748 |
tttggtttattatattttcctcctaatgtaaatcgtaaagta |
8207707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 42362886 - 42362717
Alignment:
| Q |
53 |
tttgatttattatattctcctcctaatgtaaattgtaaagtatccaattc-------tctctttctttcttttttcct-gtaggaaaaagatttggaagc |
144 |
Q |
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||||||||||||||||||||||||||| |||| |||||| | |||||||| | | ||| ||| |||||| | |||| ||||||| |||||||| |
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| T |
42362886 |
tttgatttattatattctcctcctaatataaactgtaaattttccaattcctttttatttatttatttattttttttttgtagaaaaaagagttggaagc |
42362787 |
T |
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| Q |
145 |
aggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg |
214 |
Q |
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| T |
42362786 |
ggaagttgtaaatgttacgggaatagcaaagccaagccgtaaaataaggtagatatctgagttttcagtg |
42362717 |
T |
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