View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_119 (Length: 257)
Name: NF19103_high_119
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_119 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 42846619 - 42846751
Alignment:
| Q |
48 |
tcttatgatgaataataccattcaacatatattaattcaagttaatactccttagctggaagggcaagcagccaaatctacaatagaaatgaagcactgg |
147 |
Q |
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| T |
42846619 |
tcttatgatgaataataccattcaacatatattaattcaagttaatactcctcaactggaagggcaagcagccaaatctacaatagaaatgaagcactgg |
42846718 |
T |
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| Q |
148 |
gaagcaataaaaacaaaagatatccagaacttg |
180 |
Q |
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| T |
42846719 |
gaagcaacaaaaacgaaagatatccagaacttg |
42846751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 42843791 - 42843911
Alignment:
| Q |
120 |
caaatctacaatagaaatgaagcactgggaagcaataaaaacaaaagatatccagaacttgatcccatacatagtattggaattgagtaaaccatcaagt |
219 |
Q |
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| T |
42843791 |
caaatctacaacagaaatgaagcacctggaaacaacaaaaatgaaagacatctagaacttgatcccatacataatattggaattgaataaaccattaatt |
42843890 |
T |
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| Q |
220 |
aagtctaaattatctttctct |
240 |
Q |
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| T |
42843891 |
cagtctaaattatctttctct |
42843911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42846572 - 42846601
Alignment:
| Q |
1 |
tccaacactttttacctccactcaagttcc |
30 |
Q |
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| T |
42846572 |
tccaacactttttacctccactcaagttcc |
42846601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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