View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_125 (Length: 251)
Name: NF19103_high_125
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_125 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 13287131 - 13286891
Alignment:
| Q |
5 |
gagctctataagaaggtaaacctccttcaacaagaaaacacacaactacacaaaaaggtatcgtgcagcttacttaatttgcacggcatcccttaaatca |
104 |
Q |
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| T |
13287131 |
gagctctataagaaggtaaacctccttcaacaagaaaacacacaactacacaaaaaggtatcgcgcagcttacttaatttgcacggcatcccttaaatca |
13287032 |
T |
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| Q |
105 |
caagagactcgcaccacatcagtgttgtgagtcgcggattacataaaat----taaggttcaaatttccaatgat------ctatagccgctatttgaca |
194 |
Q |
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| T |
13287031 |
caagagactcgcaccacatcagtgttgtgagtcgcggattacataaaatagcagttggttcaaatttccaatgatacagtgctatagccgctatttgatg |
13286932 |
T |
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| Q |
195 |
atgacaatacttactaaagcgtgtatcacgaaacaatagtg |
235 |
Q |
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| T |
13286931 |
atgacaatacttactaaagcatgtatcgcgaaacaatagtg |
13286891 |
T |
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Back To:
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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 47880479 - 47880429
Alignment:
| Q |
103 |
cacaagagactcgcaccacatcagtgttgtgagtcgcggattacataaaat |
153 |
Q |
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| T |
47880479 |
cacaagagactcacaccacatcagtgttgtgagtcgcggattacataaaat |
47880429 |
T |
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