View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_127 (Length: 250)
Name: NF19103_high_127
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_127 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 5920332 - 5920110
Alignment:
| Q |
28 |
atgttttttcaactagttttatgcattcccccaataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgcctt |
127 |
Q |
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| T |
5920332 |
atgtttgttcaattagttttatgcattcccccaataaatcttgtaatttttcttcttctatcagttgtgattcaagcaattgtattccagttactgcctt |
5920233 |
T |
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| Q |
128 |
atggcacttaaggcttggtcatctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatt |
227 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5920232 |
atggcacttaagacttggtaatctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtgtgatatt |
5920133 |
T |
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| Q |
228 |
tgtcacttttctaaacaaaagca |
250 |
Q |
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||||||||||||||||||||||| |
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| T |
5920132 |
tgtcacttttctaaacaaaagca |
5920110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 20324630 - 20324425
Alignment:
| Q |
39 |
actagttttatgcattcccccaataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgccttatggcacttaa |
138 |
Q |
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|||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||| || | |
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| T |
20324630 |
actagtcttatgcattctccaaataaatcttgtaatttttcttct---atcagttgtaattccaacaattgtattccagttgctgccttatggcatttta |
20324534 |
T |
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| Q |
139 |
ggcttggtcatctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatttgtcacttttc |
238 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
20324533 |
ggcttggtcatctctctaatcaaagaatgatcaaaatgtctcatttgtatccatctattgttcacaataatagagatgtgtgtgatatttgtcacttttc |
20324434 |
T |
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| Q |
239 |
taaacaaaa |
247 |
Q |
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| T |
20324433 |
taaacaaaa |
20324425 |
T |
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