View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_13 (Length: 518)

Name: NF19103_high_13
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_13
NF19103_high_13
[»] chr6 (6 HSPs)
chr6 (157-497)||(6126471-6126813)
chr6 (8-86)||(6126884-6126962)
chr6 (393-497)||(16971224-16971328)
chr6 (402-498)||(13832491-13832588)
chr6 (418-494)||(14904645-14904721)
chr6 (424-498)||(26603538-26603612)
[»] chr7 (3 HSPs)
chr7 (393-497)||(11612032-11612136)
chr7 (406-497)||(12847801-12847892)
chr7 (418-498)||(42729829-42729909)
[»] chr3 (4 HSPs)
chr3 (393-497)||(49391107-49391211)
chr3 (429-497)||(21690361-21690428)
chr3 (438-498)||(50210898-50210958)
chr3 (439-498)||(23091811-23091870)
[»] chr1 (2 HSPs)
chr1 (404-497)||(51353175-51353268)
chr1 (437-498)||(41306699-41306760)
[»] chr8 (3 HSPs)
chr8 (429-497)||(42424128-42424196)
chr8 (426-498)||(41525183-41525255)
chr8 (418-498)||(174983-175063)
[»] scaffold0062 (1 HSPs)
scaffold0062 (418-498)||(69568-69648)
[»] chr2 (5 HSPs)
chr2 (418-498)||(15721011-15721091)
chr2 (423-494)||(24543403-24543474)
chr2 (418-498)||(39843127-39843207)
chr2 (413-498)||(12412658-12412743)
chr2 (413-498)||(12424718-12424803)
[»] chr4 (1 HSPs)
chr4 (402-498)||(7501922-7502019)
[»] scaffold0445 (1 HSPs)
scaffold0445 (438-498)||(6453-6513)
[»] scaffold0494 (1 HSPs)
scaffold0494 (434-498)||(594-658)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 157 - 497
Target Start/End: Complemental strand, 6126813 - 6126471
Alignment:
Q  157 ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126813 ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata 6126714  T
Q  257 ttgagccacatgtagaaacgtgggtttgggccaaacatatatat-ttaagttaatattgtacccaaacattatttccttttatttattgcaatactacct 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126713 ttgagccacatgtagaaacgtgggtttgggccaaacatatatatcttaagttaatattgtacccaaacattatttccttttatttattgcaatactacct 6126614  T
Q  356 attttatatataaatgacttattttctcct-nnnnnnntataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaa 454  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126613 attttatatataaatgacttattttctcctaaaaaaaatataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaa 6126514  T
Q  455 acctcaaacccatacctttaccggtttaatgtccggtccggtt 497  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  6126513 acctcaaacacatacctttaccggtttaatgtccggtccggtt 6126471  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 6126962 - 6126884
Alignment:
Q  8 cagcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126962 cagcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag 6126884  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 16971224 - 16971328
Alignment:
Q  393 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 492  Q
    |||||||||  |||||||||||||||||||| |||||||||| | |||||||||||||| |||||  |||||||| ||||| ||||||||||||||||||    
T  16971224 tataaatgagatattttattaaaaacggttcgaccccggttcaatcccggttgaaccttcaaacccgaaacccatgcctttgccggtttaatgtccggtc 16971323  T
Q  493 cggtt 497  Q
    |||||    
T  16971324 cggtt 16971328  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 498
Target Start/End: Complemental strand, 13832588 - 13832491
Alignment:
Q  402 attattttattaaaaacggttcaacccc-ggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||||| ||||||  ||||| |||||| ||| | |||||||||||||||  |||||| |||||||| |||  |||||||||||||||||||||||||    
T  13832588 attatttaattaaatccggttgaacccccggtccaaccccggttgaacctcaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttt 13832491  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 494
Target Start/End: Original strand, 14904645 - 14904721
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccg 494  Q
    ||||| ||||||||||||||||||||||||||||| ||||  |||||| || ||  |||||||||||| ||||||||    
T  14904645 cggttgaaccccggttcgaccccggttgaacctttgaaccctaaacccttatctacaccggtttaatgaccggtccg 14904721  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 26603538 - 26603612
Alignment:
Q  424 aaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||||||||  |||||||||| ||| ||||||||  |||||||||||  ||||||| |||||||||||||||||    
T  26603538 aaccccggttgaaccccggttggacccttaaaccttgaacccatacctacaccggttcaatgtccggtccggttt 26603612  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 11612136 - 11612032
Alignment:
Q  393 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 492  Q
    ||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  11612136 tataattgaattattttattaataacggttcgaccctggttcgaccccggttgaacctttaaacctcgaacccttgcctttaccggtttgatgtccggtc 11612037  T
Q  493 cggtt 497  Q
    |||||    
T  11612036 cggtt 11612032  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 497
Target Start/End: Original strand, 12847801 - 12847892
Alignment:
Q  406 ttttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggtt 497  Q
    |||||||||||||||||| |||||||||| || ||||||| ||||| |||||   ||||||| | ||||||||||| || ||||||||||||    
T  12847801 ttttattaaaaacggttcgaccccggttcaactccggttggaccttcaaaccctgaacccatgcttttaccggtttgatatccggtccggtt 12847892  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 42729829 - 42729909
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||| ||||||| | | |||||||||||||||  |||||| |||| |||  ||  ||||||||||| |||||||||||||    
T  42729829 cggttgaaccccgatccaaccccggttgaacctcaaaaccttaaacacatgtctccaccggtttaatatccggtccggttt 42729909  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 49391211 - 49391107
Alignment:
Q  393 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 492  Q
    |||||||||  |||||||||||||||||||  ||| |||||| |||||||||||||||| ||||| ||||||||| |||||  |||||||||||||||||    
T  49391211 tataaatgagatattttattaaaaacggtttgacctcggttcaaccccggttgaaccttcaaaccccaaacccatgcctttgtcggtttaatgtccggtc 49391112  T
Q  493 cggtt 497  Q
    |||||    
T  49391111 cggtt 49391107  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 497
Target Start/End: Complemental strand, 21690428 - 21690361
Alignment:
Q  429 cggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggtt 497  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  21690428 cggttcgaccc-ggttcaacctttaaaccttaaacccatacctttaccgatttgatgtccggtccggtt 21690361  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 50210958 - 50210898
Alignment:
Q  438 cccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||||||||| | ||||||||| ||||||||  | ||||||||| ||||||||||||||||    
T  50210958 cccggttgaatccttaaacctcgaacccataggtataccggttttatgtccggtccggttt 50210898  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 23091811 - 23091870
Alignment:
Q  439 ccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||||||||||   |||||| |||||||| |||  |||||||||||||||||||||||||    
T  23091811 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttt 23091870  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 497
Target Start/End: Complemental strand, 51353268 - 51353175
Alignment:
Q  404 tattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggtt 497  Q
    |||||||||||||| ||||| |||||||||| |||||||||| ||||| |||||   ||||||| ||||||||||||| |||||||||||||||    
T  51353268 tattttattaaaaatggttcgaccccggttcaaccccggttggaccttcaaaccctgaacccatgcctttaccggtttgatgtccggtccggtt 51353175  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 41306760 - 41306699
Alignment:
Q  437 ccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||||||||||||| ||||||| |||||||| ||| |||||||||| |||||||||||||||    
T  41306760 ccccggttgaacctctaaaccttaaacccatgcctataccggtttattgtccggtccggttt 41306699  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 42424128 - 42424196
Alignment:
Q  429 cggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggtt 497  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||    
T  42424128 cggttcgaccccggttgaacctttaaacctcgaacccatgcctttaccggtttgatgttcggtccggtt 42424196  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 41525183 - 41525255
Alignment:
Q  426 ccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||||||||| ||||||||||||||| || ||| ||||| || || ||||||||||||||||||||||||||    
T  41525183 ccccggttcgatcccggttgaacctttgaagctcgaacccctatctataccggtttaatgtccggtccggttt 41525255  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 174983 - 175063
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||| ||||| |||||||||||||| ||||||| |||||   |||||| ||||  |||||||  ||||||||||||||||    
T  174983 cggttgaaccctggttcgaccccggtcgaaccttcaaaccctgaacccaaacctacaccggttcgatgtccggtccggttt 175063  T

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Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 69568 - 69648
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||| ||||||||| | |||||||||||||||  |||||| ||||||||  ||  |||||||||||||||||||||||||    
T  69568 cggttgaaccccggtccaaccccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttt 69648  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 15721011 - 15721091
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||| ||||||||| | |||||||||||||||  |||||| ||||||||  ||  |||||||||||||||||||||||||    
T  15721011 cggttgaaccccggtccaaccccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttt 15721091  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 494
Target Start/End: Complemental strand, 24543474 - 24543403
Alignment:
Q  423 caaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccg 494  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||| |  |||||||| ||| ||| ||||    
T  24543474 caacctcggttcgaccccggtcgaacctttaaacctcaaacccctacttgcaccggtttcatgaccgatccg 24543403  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 39843207 - 39843127
Alignment:
Q  418 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||| |||| |||||| ||||||||||||||   |||||| |||||||| |||  | |||||||| ||||||||||||||    
T  39843207 cggttgaacctcggttcaaccccggttgaaccccaaaaccttaaacccatgcctacatcggtttaacgtccggtccggttt 39843127  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 12412658 - 12412743
Alignment:
Q  413 aaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||| ||||| |||||||||||||| ||||| |||||||  ||||   |||||| ||||  |||||||  ||||||||||||||||    
T  12412658 aaaaccggttgaaccccggttcgactccggtcgaaccttcgaaccctgaacccaaacctacaccggttcgatgtccggtccggttt 12412743  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 12424718 - 12424803
Alignment:
Q  413 aaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||| ||||| |||||||||||||| ||||| |||||||  ||||   |||||| ||||  |||||||  ||||||||||||||||    
T  12424718 aaaaccggttgaaccccggttcgactccggtcgaaccttcgaaccctgaacccaaacctacaccggttcgatgtccggtccggttt 12424803  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 7501922 - 7502019
Alignment:
Q  402 attattttattaaaaacggttcaacccc-ggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||||| ||||||  ||||| |||||| ||| | |||||| ||||||||  |||||| |||||||| |||  |||| ||||||||||||||||||||    
T  7501922 attatttaattaaatccggttgaacccccggtccaaccccgattgaacctcaaaaccttaaacccatgcctacaccgatttaatgtccggtccggttt 7502019  T

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Target: scaffold0445 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 6513 - 6453
Alignment:
Q  438 cccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    |||||||||||||  |||||| |||||||| |||  || ||||||||||||||||||||||    
T  6513 cccggttgaacctcaaaaccttaaacccatgcctacacgggtttaatgtccggtccggttt 6453  T

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Target: scaffold0494 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 658 - 594
Alignment:
Q  434 cgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttt 498  Q
    ||||||||||||||||||| ||||   |||||||| ||  ||||||||||  |||||||||||||    
T  658 cgaccccggttgaacctttgaaccctgaacccatatctaaaccggtttaaactccggtccggttt 594  T

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