View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_139 (Length: 244)

Name: NF19103_high_139
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_139
NF19103_high_139
[»] chr5 (15 HSPs)
chr5 (19-235)||(41327966-41328182)
chr5 (19-239)||(41331979-41332199)
chr5 (21-235)||(41322051-41322266)
chr5 (19-212)||(41324068-41324261)
chr5 (19-231)||(41315999-41316211)
chr5 (19-231)||(41366159-41366371)
chr5 (24-151)||(41336913-41337040)
chr5 (19-225)||(31188686-31188892)
chr5 (19-150)||(31224921-31225052)
chr5 (19-125)||(41369552-41369658)
chr5 (38-153)||(41430949-41431064)
chr5 (48-232)||(31178634-31178818)
chr5 (20-96)||(41359815-41359890)
chr5 (48-114)||(31185277-31185343)
chr5 (20-88)||(41286071-41286139)
[»] chr4 (1 HSPs)
chr4 (18-163)||(17249436-17249581)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 41327966 - 41328182
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||| | ||||||||||||    
T  41327966 gcaattacgaaagatatgtgttatagagctattaagtgcaaagcgtgtacaatcatttaggtccataagagaagatgaggtgtcaaaccttgttaaatca 41328065  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagac 218  Q
    ||| ||  ||||||||||||  ||||||||||||| | ||||||| ||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  41328066 ataactgcaagtgaaggatcagttgttaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagac 41328165  T
Q  219 accaagatgtgttcata 235  Q
    |||||||||||||||||    
T  41328166 accaagatgtgttcata 41328182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 41331979 - 41332199
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||  || ||||||||||||||    
T  41331979 gcaagtacgaaagatatgtgttatagagctattaagtgcaaagcgtgtccaatcatttaggtccataagagaagatgaagtgacaaatcttgttaaatca 41332078  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagac 218  Q
    ||| ||  ||||||||||||  |||| |||||||| | ||||||| ||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||     
T  41332079 ataactgcaagtgaaggatcggttgtaaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagaa 41332178  T
Q  219 accaagatgtgttcatatcag 239  Q
    |||||||||||||||||||||    
T  41332179 accaagatgtgttcatatcag 41332199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 41322051 - 41322266
Alignment:
Q  21 aactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatcaat 120  Q
    ||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| ||||||||||| || ||  || ||||||||||||||||    
T  41322051 aactacgaaagatatgcgttatagaactattaagtgcaaagcgcatccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaat 41322150  T
Q  121 atc-tagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagaca 219  Q
    | | |  ||||||||||||  ||||||||||||   |||||||| ||||| ||||| ||||||| |||||  |||||| |||||||||||||||||||||    
T  41322151 aacttttaagtgaaggatcagttgttaatctcagtgagaagattttctcaatgacatatgggataacagcgagggcggtttttgggaaaaggaatagaca 41322250  T
Q  220 ccaagatgtgttcata 235  Q
    ||||||||||||||||    
T  41322251 ccaagatgtgttcata 41322266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41324068 - 41324261
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| |||||| || ||||    
T  41324068 gcaactacgaaagatatgtgttgtagagctattaagtgcaaagcgtgtccaatcatttaggtccacaagagaagatgaagtatcaaatcttgctacatca 41324167  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaagga 212  Q
    ||| ||  |||||||||||| |||||||||||||| || |||||| ||||| ||||| ||||||| ||| | |||||||||||||| |||||||    
T  41324168 ataactgcaagtgaaggatcaattgttaatctcactcataagattttctcaatgacatatgggataacaacgcgggcggcttttggcaaaagga 41324261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 41315999 - 41316211
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| || ||  || ||||||||||||||    
T  41315999 gcaactacgaaagatatgtgttatagaactattaagcgcaaagcgtgtccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatca 41316098  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagac 218  Q
    ||| ||  ||||||||||||  ||||||||||||| ||||||||| | |||  |||| ||||||| ||||| || |||||||||||||||||||  | ||    
T  41316099 ataactgcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaac 41316198  T
Q  219 accaagatgtgtt 231  Q
    ||||||| |||||    
T  41316199 accaagaagtgtt 41316211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 41366159 - 41366371
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||| ||||||| ||||| |||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  41366159 gcaattacgaaaaatatgtgttgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatca 41366258  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagac 218  Q
    ||| ||  ||||||||||||  ||||||||||||| || | |||| ||||||| |||| |||||| ||||| ||||| || ||||| |||| ||||| ||    
T  41366259 ataactgcaagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcgggcagcatttggaaaaaagaataaac 41366358  T
Q  219 accaagatgtgtt 231  Q
    ||||||| |||||    
T  41366359 accaagaagtgtt 41366371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 41336913 - 41337040
Alignment:
Q  24 tacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatcaatatc 123  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||||||||||||    
T  41336913 tacgaaagatatgtgttgtagagctattaagtgcaaaacgtgtccaatcttttagtttcataagagaagaagaggtgtccgatcttgttaaatcaatatc 41337012  T
Q  124 tagaagtgaaggatctattgttaatctc 151  Q
    |  || ||||||||| || |||||||||    
T  41337013 tgcaaatgaaggatcaatcgttaatctc 41337040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 31188892 - 31188686
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||||||||||||||||| ||| || |  ||||||||||||| ||||||||||| |||||||  ||||||||||||||||| ||| ||||||||||||||    
T  31188892 gcaactacgaaagatatgtgttttacaattattaagtgcaaagcgtgtccaatcgtttaggtatataagagaagaagaggtgtcaaatcttgttaaatca 31188793  T
Q  119 atatctagaagtgaaggatctattgttaatctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagac 218  Q
    ||||||  |||||||||||| |||||||||||||  || |||||| | | | |||||   ||||| ||  |||| || || ||||||||||||| || ||    
T  31188792 atatctgcaagtgaaggatcaattgttaatctcagtcataagatttttttaatgacatcagggataacgacacgagcagcgtttgggaaaaggagtaaac 31188693  T
Q  219 accaaga 225  Q
    |||||||    
T  31188692 accaaga 31188686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 31224921 - 31225052
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||| ||||||||||||| ||| || |  ||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||| |||||||| |||||    
T  31224921 gcaaatacgaaagatatgtgttttacaattattaagtgcaaagcgtgtccaatcatttaggtatataagagaagaagaggtgtcaaatcttgttgaatca 31225020  T
Q  119 atatctagaagtgaaggatctattgttaatct 150  Q
    ||||||  |||||||||||| |||||||||||    
T  31225021 atatctgcaagtgaaggatcaattgttaatct 31225052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 41369552 - 41369658
Alignment:
Q  19 gcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatca 118  Q
    |||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||   || |||||||||    
T  41369552 gcaactacgaaagatatgtgttgtagagctattaaatgcaaagcgtgtccaatcatttaggtccataagagaagaagaggtttcatcactagttaaatca 41369651  T
Q  119 atatcta 125  Q
    |||||||    
T  41369652 atatcta 41369658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 41430949 - 41431064
Alignment:
Q  38 gttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatcaatatctagaagtgaaggat 137  Q
    |||| ||||||||||||| ||||| ||||||| ||||||  ||||||||||||||||||||| ||| | || |||||||| |||| || | |||||||||    
T  41430949 gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggat 41431048  T
Q  138 ctattgttaatctcac 153  Q
    | ||||||||||||||    
T  41431049 caattgttaatctcac 41431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 31178818 - 31178634
Alignment:
Q  48 tattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatcaatatctagaagtgaaggatctattgttaa 147  Q
    ||||||||||||| | |||||||||||||||||  ||||||||| ||||||| ||| ||||| ||||||| ||||||| |||| |||||||  |||| ||    
T  31178818 tattaagtgcaaagcatgtccaatcatttaggtatataagagaataagaggtgtcaaatcttattaaatcgatatctacaagtaaaggatcagttgtaaa 31178719  T
Q  148 tctcacacagaagattatctcattgacaaatgggattacagcacgggcggcttttgggaaaaggaatagacaccaagatgtgttc 232  Q
    |||||  || |||||| || || |||||   | ||| ||  |||| || || |||||||||||||||| ||||||| | ||||||    
T  31178718 tctcagtcataagattttcgcaatgacatcggcgataacgacacgagcagcgtttgggaaaaggaataaacaccaacaagtgttc 31178634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 41359815 - 41359890
Alignment:
Q  20 caactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaaga 96  Q
    ||||| |||||| | || |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  41359815 caactccgaaagttgtgtgttacagagctattaagtg-aaaatgtgtccaatcatttaggtccataagagaagaaga 41359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 31185343 - 31185277
Alignment:
Q  48 tattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaa 114  Q
    ||||||||||||| |||||| ||||||||||||  ||||||||||||||||| ||| ||||||||||    
T  31185343 tattaagtgcaaagcgtgtctaatcatttaggtatataagagaagaagaggtgtcaaatcttgttaa 31185277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 41286071 - 41286139
Alignment:
Q  20 caactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataaga 88  Q
    ||||| |||||| |||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||||    
T  41286071 caactgcgaaagctatgtgttatagagctattaagtgcaaagcgtgttcaatcatttagttctataaga 41286139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 17249581 - 17249436
Alignment:
Q  18 agcaactacgaaagatatgcgttatagagctattaagtgcaaaacgtgtccaatcatttaggtccataagagaagaagaggtatcagatcttgttaaatc 117  Q
    ||||||| |||||||||||||||  | | || |||||||  |||||||||||||| ||||| ||  ||||||||||||| || | |||||||||||||||    
T  17249581 agcaactgcgaaagatatgcgttgaacaacttttaagtgttaaacgtgtccaatcgtttagatcggtaagagaagaagaagtgttagatcttgttaaatc 17249482  T
Q  118 aatatctagaagtgaaggatctattgttaatctcacacagaagatt 163  Q
    ||||| |  ||||||||||| | ||||||||||||| |||||||||    
T  17249481 aatattttcaagtgaaggatgtgttgttaatctcactcagaagatt 17249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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