View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_14 (Length: 510)
Name: NF19103_high_14
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_14 |
 | |
|
| [»] chr5 (14 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 112 - 510
Target Start/End: Original strand, 37427625 - 37428014
Alignment:
| Q |
112 |
cgatataagactgcattactcaaacagagaaattcaaataaccaacaaccg-tatcttcatatttgaaaagaccctcatcaaatgacttcattcttctag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37427625 |
cgatataagactgcattactcaaacagagaaattcaaattaccaaccgtatatatcttcatatttgaaaagaccctcatca----------ttcttctag |
37427714 |
T |
|
| Q |
211 |
gatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagagtacaat |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37427715 |
gatttgcacgggctctagtgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagagtacaat |
37427814 |
T |
|
| Q |
311 |
atatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcatatgttgaatgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37427815 |
atatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcagatgttgaatgt |
37427914 |
T |
|
| Q |
411 |
ggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37427915 |
ggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
37428014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 170 - 510
Target Start/End: Complemental strand, 37394425 - 37394082
Alignment:
| Q |
170 |
atatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaaa |
269 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||| |||||| ||||| ||||||| ||||| ||||||||||||||||||||| | | |||| | |
|
|
| T |
37394425 |
atatttgaaaacaccctcatcaaattaattcatccttctacgatttaagttggctctattgtttgatcttttcaatcttatgttaaacatattttcaaca |
37394326 |
T |
|
| Q |
270 |
agtctaacaaaccattatggtttcccaatgaagag---tacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctt |
366 |
Q |
| |
|
|||| ||| ||||| ||||| ||| |||||| |||| |||||||||| | || |||| |||||| ||||||| |||||| ||| ||||||||| |
|
|
| T |
37394325 |
tgtcttgcaagccattggggttttccagtgaagaagaatacattatatcccaacagcaacccatatattgccccacatccatatccgattgctaccgctt |
37394226 |
T |
|
| Q |
367 |
tccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacat |
466 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37394225 |
tccagccaaatcctgattcttcttcatcttcagatgttgaatgcggtggaagatcttcctcatttttgcatgatttagacaattggaatccacacaacat |
37394126 |
T |
|
| Q |
467 |
tgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
37394125 |
tgtattcccttcataagaatcatttccaaatgtatcaaattgtt |
37394082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 169 - 510
Target Start/End: Original strand, 37638366 - 37638710
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| ||| ||||||||||||||||||| ||| | || |||| |
|
|
| T |
37638366 |
catatttgaaaagaccctcatccaattaattcattcttctgcgatttgcgatggctctgttgttcgttcttttcaatcttatgtcaaacatatgttcaac |
37638465 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttcccaatgaagag---tacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
| |||| ||| ||||| ||||| ||| |||||| |||| |||||||||| | || ||| ||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
37638466 |
atgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatcccaatagcaacccgaatattgccccacatgcatatccgattgctaccgct |
37638565 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37638566 |
ttccagccaaatccggattcttcttcatcttcagatgttgaatgaggtggcagatcttcctcatttttgcatgatttagacaattggaatccacacaaca |
37638665 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
37638666 |
ttgtatttccttcaaaagaatcatttccaaatgtattaaactgtt |
37638710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 230 - 510
Target Start/End: Original strand, 37434391 - 37434674
Alignment:
| Q |
230 |
gtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagag---tacaatatatcccaagatcatc |
326 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||| |||||||| || ||||| ||||| ||| |||||| |||| |||||||||| | || | |
|
|
| T |
37434391 |
gtttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatatcccaacagcaac |
37434490 |
T |
|
| Q |
327 |
ccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcat |
426 |
Q |
| |
|
|||||||||| ||||||| |||||| || ||||||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||| |||||| | |
|
|
| T |
37434491 |
ccaaatattgccccacatccatatccgatcactaccgttttccagccaaatcctgattcttcttcgtcttcagatgttgaatgtggtggcagatctttct |
37434590 |
T |
|
| Q |
427 |
catttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
37434591 |
cgtttttgcatgatttagacaatgggaatccacataacattgtatttccttcataggaatcattttcaaatgtagcaaattgtt |
37434674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 299 - 510
Target Start/End: Original strand, 37701442 - 37701650
Alignment:
| Q |
299 |
gaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttca |
398 |
Q |
| |
|
||||| |||| |||||||||||| || ||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
37701442 |
gaagaatacattatatcccaagagcaacccgaatattgccccacatgcatatcctattgctaccgctttccagccaaatcctga---ctcttcatcttca |
37701538 |
T |
|
| Q |
399 |
tatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatg |
498 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
37701539 |
gatgttgaatgaggtggaagatcttcctcatttttgcatgatttagacaattggaatccacacaacattgtatttccttcataggaattatttccaaatg |
37701638 |
T |
|
| Q |
499 |
tatcaaactgtt |
510 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37701639 |
tatcaaactgtt |
37701650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 163 - 510
Target Start/End: Original strand, 37710121 - 37710471
Alignment:
| Q |
163 |
tatcttcatatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttg |
262 |
Q |
| |
|
||||| |||||||||||| ||| ||||| ||| | ||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||| | || |
|
|
| T |
37710121 |
tatctacatatttgaaaacaccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatg |
37710220 |
T |
|
| Q |
263 |
ctcaaaaagtctaacaaaccattatggtttcccaatgaagag---tacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattact |
359 |
Q |
| |
|
|||| | |||| |||| ||||| ||||| || |||||| |||| ||||||| || | || ||| ||||||| |||||||||||||| ||| || |
|
|
| T |
37710221 |
ttcaacatgtcttacaagccattcgggtttaccggtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgct |
37710320 |
T |
|
| Q |
360 |
accgctttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccac |
459 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
37710321 |
accgctttccagccaaatcctgattcttcttcatcttcagatgttgaatgaggtggcagatcttcctcatttttgcatgatttagacaatggaaatccac |
37710420 |
T |
|
| Q |
460 |
ataacattgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
| ||||||||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
37710421 |
acaacattgtatttccttcaaaagaatcatttccaaatgtattaaactgtt |
37710471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 510
Target Start/End: Original strand, 37822524 - 37822868
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||| | ||||||| |||||| ||| ||||||||||||||||||| ||| | || |||| |
|
|
| T |
37822524 |
catatttgaaaagaccctcatccaattaattcattcttatgcgatttgcgatggctctgttgttcgttcttttcaatcttatgtcaaacatatgttcaac |
37822623 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttcccaatgaagag---tacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
| |||| ||| ||||| ||||| ||| |||||| |||| ||||||| || | || ||| || |||| |||||||||||||| ||| |||||||| |
|
|
| T |
37822624 |
atgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatccgaatagcaacccgaagattgccccacatgcatatccgattgctaccgct |
37822723 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37822724 |
ttccagccaaatcctgattcttcttcatcttcagatgttgaatgaggtggccgatcttcctcatttttgcatgatttagacaatggaaatccacataaca |
37822823 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
37822824 |
ttgtatttccttcaaaagaatcatttccaaatgtattaaactgtt |
37822868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 113 - 510
Target Start/End: Original strand, 37439637 - 37440034
Alignment:
| Q |
113 |
gatataagactgcattactcaaacagagaaattcaaataaccaacaaccgtatcttcatatttgaaaagaccctcatcaaatgacttcattcttctagga |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || ||||||||||||| || ||| ||| ||| |||||||| | |||||||| | || |
|
|
| T |
37439637 |
gatataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatattttttaaa-gacttgcatcaaattaattcattcta-tgtga |
37439734 |
T |
|
| Q |
213 |
tttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagag---tacaa |
309 |
Q |
| |
|
|||||| ||| || | |||||||||||||| ||||||||||||||| ||| ||| |||||||| || |||| ||||| ||| |||||| || | |
|
|
| T |
37439735 |
tttgcaagggatcaattgtttgttcttttcagtcttatgttaaatgtatgc-caacaagtctaagaagtcattcaggttttccagtgaagaagaatagat |
37439833 |
T |
|
| Q |
310 |
tatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcatatgttgaatg |
409 |
Q |
| |
|
|||||||||| | || ||| ||||||| ||||||| |||||| || || || |||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
37439834 |
tatatcccaatagcaacccgaatattgccccacatccatatccgatcaccacagctttccagccaaatcctgattcctcttgatcatcagttgttgaata |
37439933 |
T |
|
| Q |
410 |
cggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgtatcaaactgt |
509 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37439934 |
tggtggaagatcttcctcatttttgcatggcttagacaatggatatccacataacattgtattcccttcataggaatcatttccaaatgtaccaaactgt |
37440033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 169 - 510
Target Start/End: Original strand, 37695215 - 37695559
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| | | |||| |
|
|
| T |
37695215 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaac |
37695314 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttccca---atgaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
|| |||||||| ||||| ||||| ||| | ||||| |||| |||||||||||| | ||| |||||| ||||||| |||||| ||| | || ||| |
|
|
| T |
37695315 |
aattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagct |
37695414 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||||| |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
37695415 |
ttccagccaaatcctgattcttcttcatcttcagatgtcgaatgtggtggtagatcttcatcatttttgcataatctagacaatgggaatccacataaca |
37695514 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
37695515 |
tagtattcccttcataggaatcatttccaaacgtattaaactgtt |
37695559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 169 - 510
Target Start/End: Original strand, 37531720 - 37532064
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| | | |||| |
|
|
| T |
37531720 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaac |
37531819 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttccca---atgaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
|| |||||||| ||||| ||||| ||| | ||||| |||| |||||||||||| | ||| |||||| ||||||| |||||| ||| | || ||| |
|
|
| T |
37531820 |
aattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagct |
37531919 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37531920 |
ttccagccaaatcctgattcttcttcatcttcagatgttgaatgaggtggcagatcttcctcatttttgcatgatttagacaattggaatccacacaaca |
37532019 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
37532020 |
ttgtatttccttcaaaagaatcatttccaaatgtattaaactgtt |
37532064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 510
Target Start/End: Original strand, 37592824 - 37593168
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| | | |||| |
|
|
| T |
37592824 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaac |
37592923 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttccca---atgaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
|| |||||||| ||||| ||||| ||| | ||||| |||| |||||||||||| | ||| |||||| ||||||| |||||| ||| | || ||| |
|
|
| T |
37592924 |
aattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagct |
37593023 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37593024 |
ttccagccaaatccggattcttcttcatcttcagatgttgaatgaggtggcagatcttcctcatttttgcatgatttagacaattggaatccacacaaca |
37593123 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
37593124 |
ttgtatttccttcaaaagaatcatttccaaatgtattaaactgtt |
37593168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 169 - 510
Target Start/End: Complemental strand, 37402538 - 37402194
Alignment:
| Q |
169 |
catatttgaaaagaccctcatcaaatgacttcattcttctaggatttgcacgggctctagcgtttgttcttttcaatcttatgttaaatgtttgctcaaa |
268 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| | | |||| |
|
|
| T |
37402538 |
catatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaac |
37402439 |
T |
|
| Q |
269 |
aagtctaacaaaccattatggtttccca---atgaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgct |
365 |
Q |
| |
|
|| |||||||| ||||| ||||| ||| | ||||| |||| |||||||||||| | ||| |||||| ||||||| |||||| ||| | || ||| |
|
|
| T |
37402438 |
aattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagct |
37402339 |
T |
|
| Q |
366 |
ttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataaca |
465 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37402338 |
ttccagccaaatccggattcttcttcatcttcagatgttgaatgaggtggcagatcttcctcatttttgcatgatttagacaattggaatccacacaaca |
37402239 |
T |
|
| Q |
466 |
ttgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
||||||| |||||| | ||||||||| ||||||||| |||||||| |
|
|
| T |
37402238 |
ttgtatttccttcaaaagaatcattttcaaatgtattaaactgtt |
37402194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 339 - 510
Target Start/End: Complemental strand, 37383693 - 37383522
Alignment:
| Q |
339 |
ccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcatttttgcatg |
438 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||| ||||||||||| || | | ||||||||| || | |||||||||| ||||||||| |
|
|
| T |
37383693 |
ccacatgcatatcctattaccactgctttccagccaaatccagattcctcttcatcattagatgttgaatatggcgaccaatcttcatcagttttgcatg |
37383594 |
T |
|
| Q |
439 |
atttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgtatcaaactgtt |
510 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
37383593 |
attttgacaatggaaatccacataacattgtatttccttcaaaggaatcatttccaaatgtaccaaactgtt |
37383522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 37427521 - 37427595
Alignment:
| Q |
8 |
agcagcacagagtagtaacaccaaaacaattaatccaactatgagaataaccatttcaagaaaccacacaaactc |
82 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37427521 |
agcaacacaaagtagtaacaccaaaacaattaatccaactatgagaataaccatttcaagaaaccacacaaactc |
37427595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 299 - 510
Target Start/End: Complemental strand, 16844403 - 16844192
Alignment:
| Q |
299 |
gaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttca |
398 |
Q |
| |
|
||||| |||| |||||||||||| || ||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
16844403 |
gaagaatacattatatcccaagagcaacccgaatattgcaccacatgcatatccgattgttaccgctttccagccaaatcctgattcttcttcatcttca |
16844304 |
T |
|
| Q |
399 |
tatgttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatg |
498 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||||| ||||| ||| |||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16844303 |
gatgttgaatgttgtggcagatcttcctcatttttgcatgaattagagaatggcaatccacacaacattgtattcccttgataggaatcatttccaaatg |
16844204 |
T |
|
| Q |
499 |
tatcaaactgtt |
510 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
16844203 |
tattaaattgtt |
16844192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 230 - 499
Target Start/End: Complemental strand, 24219207 - 24218938
Alignment:
| Q |
230 |
gtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaagagtacaatatatcccaagatcatccca |
329 |
Q |
| |
|
|||||| ||||||||||||||| ||||| | |||| | |||| ||| ||||| ||||||||| |||||| ||| |||||||||||| || ||| |
|
|
| T |
24219207 |
gtttgtccttttcaatcttatgctaaatatgctttcaacatgtcttgcaagccattgaggtttcccagtgaagaacacactatatcccaagaggattcca |
24219108 |
T |
|
| Q |
330 |
aatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttcttcttcatatgttgaatgcggtggttgatcttcatcat |
429 |
Q |
| |
|
| || || ||||||| |||||| |||| |||| ||||||||||||||||| |||||||| || || | | | ||||||| ||||| |||||||||||| |
|
|
| T |
24219107 |
agtactgccccacatccatatcctattgctactgctttccagccaaatcccgattcctcgtcatcattagacgttgaatatggtggccgatcttcatcat |
24219008 |
T |
|
| Q |
430 |
ttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgt |
499 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
24219007 |
ttttgcatgattttgacaatggaaatccacataacattgcatttccttcataggaatcatttccaaatgt |
24218938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 16846966 - 16846869
Alignment:
| Q |
402 |
gttgaatgcggtggttgatcttcatcatttttgcatgatttagacaatatgaatccacataacattgtattcccttcataggaatcatttccaaatgta |
500 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| ||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16846966 |
gttgaatgtggtggcagatcttcctcatttttt-atgatttagacgatgggaatccacacaacattgtatttccttcataggaatcatttccaaatgta |
16846869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University