View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_141 (Length: 243)

Name: NF19103_high_141
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_141
NF19103_high_141
[»] chr4 (5 HSPs)
chr4 (13-225)||(2566039-2566233)
chr4 (176-225)||(43429325-43429374)
chr4 (176-225)||(21438393-21438442)
chr4 (114-153)||(1757358-1757397)
chr4 (176-225)||(51206853-51206902)
[»] chr7 (4 HSPs)
chr7 (59-165)||(24007376-24007482)
chr7 (114-151)||(7792353-7792390)
chr7 (114-167)||(33618193-33618246)
chr7 (117-149)||(38599738-38599770)
[»] chr3 (3 HSPs)
chr3 (114-167)||(51390518-51390571)
chr3 (77-151)||(34848184-34848258)
chr3 (176-225)||(54523246-54523295)
[»] chr2 (5 HSPs)
chr2 (176-225)||(6256960-6257009)
chr2 (176-225)||(12328780-12328829)
chr2 (114-167)||(43871378-43871431)
chr2 (114-148)||(9171577-9171611)
chr2 (114-166)||(42554034-42554086)
[»] chr1 (2 HSPs)
chr1 (176-225)||(4437186-4437235)
chr1 (176-225)||(25668984-25669033)
[»] chr5 (1 HSPs)
chr5 (114-167)||(25595424-25595477)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 2566233 - 2566039
Alignment:
Q  13 gaatacagtttgatcaatccatctaaaaattgtccatcatttacatatgatataaacaggctattgaaacattaacgatgtatgaagcagtgatagtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||                  |||||||||||||||||||||||    
T  2566233 gaatacagtttgatcaatccatctaaaaattgtccatcatttgtatatgatgtaaacag------------------atgtatgaagcagtgatagtaat 2566152  T
Q  113 gaggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtagttttaattagaatgacgtagaagacggatgaaggaagttagacaa 212  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2566151 gaggataataaagtaacgaaacaataacgatgtaatcaacattaacatgatgtagttttaattagaatgacgtagaaggcggatgaaggaagttagacaa 2566052  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 43429325 - 43429374
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  43429325 agaatgacatagaagaaggatgaaggaagttagacaaaccagatgaataa 43429374  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 21438442 - 21438393
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| |||||||||||||||||||||| ||||||||||    
T  21438442 agaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataa 21438393  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 1757397 - 1757358
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaaca 153  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  1757397 aggataataaactaacgaaacaataacgatgtaatcaaca 1757358  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 51206853 - 51206902
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||| | |||||||||||||||||||||| ||||||||||    
T  51206853 agaatggcatagaaaaaggatgaaggaagttagacaaaccagatgaataa 51206902  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 24007482 - 24007376
Alignment:
Q  59 atgatataaacaggctattgaaacattaacgatgtatgaagcagtgatagtaatgaggataataaagtaacggaacaataacgatgtaatcaacatcaac 158  Q
    ||||| |||||||| | | |||||| ||||||| |||||||||||||||| ||| ||||||||||| ||| | |||||||| ||||||||||| | ||||    
T  24007482 atgatgtaaacaggttgtcgaaacaataacgatatatgaagcagtgatagcaataaggataataaaataatgaaacaataaagatgtaatcaataacaac 24007383  T
Q  159 atgatgt 165  Q
    | |||||    
T  24007382 acgatgt 24007376  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 7792390 - 7792353
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaa 151  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7792390 aggataataaagtaacgaaacaataacgatgtaatcaa 7792353  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 33618193 - 33618246
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 167  Q
    ||||||||||||||| | |||||||||||||||||| | | ||||| |||||||    
T  33618193 aggataataaagtaaagaaacaataacgatgtaatcgataacaacacgatgtag 33618246  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 38599738 - 38599770
Alignment:
Q  117 ataataaagtaacggaacaataacgatgtaatc 149  Q
    |||||||||||||| ||||||||||||||||||    
T  38599738 ataataaagtaacgaaacaataacgatgtaatc 38599770  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 51390518 - 51390571
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 167  Q
    ||||||||||||||||| |||||| ||||||||||| | | |||||||||||||    
T  51390518 aggataataaagtaacgaaacaatgacgatgtaatcgataacaacatgatgtag 51390571  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 34848184 - 34848258
Alignment:
Q  77 tgaaacattaacgatgtatgaagcagtgatagtaatgaggataataaagtaacggaacaataacgatgtaatcaa 151  Q
    ||||||| |||| |||||||||| |||||||  ||| ||| ||||||||||||  ||||||||  ||||||||||    
T  34848184 tgaaacagtaacaatgtatgaaggagtgataacaataaggttaataaagtaacaaaacaataataatgtaatcaa 34848258  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 54523246 - 54523295
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| |||||||| ||||||||||||| ||||||||||    
T  54523246 agaatggcatagaagaaggatgaagaaagttagacaaaccagatgaataa 54523295  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 6257009 - 6256960
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| |||||||||||||||||||||| ||||||||||    
T  6257009 agaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataa 6256960  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 12328829 - 12328780
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  12328829 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataa 12328780  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 43871431 - 43871378
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 167  Q
    |||||||||||| |||| |||||||||||||||||| | | |||||||||||||    
T  43871431 aggataataaagcaacgaaacaataacgatgtaatctataacaacatgatgtag 43871378  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 9171611 - 9171577
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaat 148  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171611 aggataataaagtaacgaaacaataacgatgtaat 9171577  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 42554086 - 42554034
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgta 166  Q
    ||||||||| |||||||  ||||||||||||||||| | | ||||||||||||    
T  42554086 aggataatagagtaacgagacaataacgatgtaatcgataacaacatgatgta 42554034  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 4437186 - 4437235
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  4437186 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataa 4437235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 25668984 - 25669033
Alignment:
Q  176 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataa 225  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  25668984 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataa 25669033  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 25595477 - 25595424
Alignment:
Q  114 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 167  Q
    ||||||||| ||||| | |||||||||||||||||| | ||||||| |||||||    
T  25595477 aggataatagagtaaagaaacaataacgatgtaatcgatatcaacacgatgtag 25595424  T

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