View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_142 (Length: 243)
Name: NF19103_high_142
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_142 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 7523248 - 7523043
Alignment:
| Q |
27 |
cacatgttttacatggttaaaatccaactaatcaatgtattttattcatttattttttgaacttttccttatcatagacatagttatttttctacaagca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523248 |
cacatgttttacatggttaaaatccaactaatcaatgtattttattcatttattttttgaacttttccttatcatagacatagttatttttctacaagca |
7523149 |
T |
|
| Q |
127 |
cagtgagaatgtattcttgatatatgattttaggctgccggtcaatatttaagggagaatattatcggataattcttcttattctacaactatagatgtt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
7523148 |
cagtgagaatgtattcttgatatatgattttaggccgccggtcaatatttaagggagaatattatgggataattcttcttattctgcaactatagatgtt |
7523049 |
T |
|
| Q |
227 |
tctgat |
232 |
Q |
| |
|
|||||| |
|
|
| T |
7523048 |
tctgat |
7523043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 7522679 - 7522816
Alignment:
| Q |
89 |
ttttccttatcatagacatagttatttttctacaagcacagtgagaatgtattcttgatatatgattttaggctgccggtcaatatttaagggagaatat |
188 |
Q |
| |
|
|||||| |||||||||||| | || ||||||||||| ||| ||||| || ||||| ||||||||| ||||| | |||||||||| || || || | | |
|
|
| T |
7522679 |
ttttccatatcatagacatggctaattttctacaagaacaatgagagtggattctctatatatgatattaggtcgttggtcaatattcaaaggggagttt |
7522778 |
T |
|
| Q |
189 |
tatcggataattcttcttattctacaactatagatgtt |
226 |
Q |
| |
|
||| ||| ||||||||||||| | |||||||||||||| |
|
|
| T |
7522779 |
tatgggacaattcttcttattatgcaactatagatgtt |
7522816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University