View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_143 (Length: 243)
Name: NF19103_high_143
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_143 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46817716 - 46817495
Alignment:
| Q |
1 |
taaaatatgagtcaacttcttactaactagatcaacctttaacacatgtacttcattttgatgataaaaatcaaaggaaggacaaaatttctcaaacgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46817716 |
taaaatatgagtcaacttcttactaactagatgaacctttgacacatgtacttcattttgatgataaaaatcaaagga----caaaatttctcaaacgta |
46817621 |
T |
|
| Q |
101 |
gatagacttaatatactaataaaatcttgtaaaataacattatgtggatcaagtagaataatacatgctttttcaaaactgggtgaattaacggaacttg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817620 |
gatagacttaatgtactaataaaatcttataaaataacattatgtggatcaagtagaataatacatgctttttcaaaactgggtgaattaacggaacttg |
46817521 |
T |
|
| Q |
201 |
aagaaatgtgataggccatgtattcta |
227 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
46817520 |
aagaaatg-gataggccatgtattcta |
46817495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 46819842 - 46819785
Alignment:
| Q |
118 |
aataaaatcttgtaaaataacattatgtggatcaagtagaataatacatgctttttca |
175 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
46819842 |
aataaaatcttataaaataaaattatgtggatcaagtagaataatacacgttttttca |
46819785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 46819759 - 46819719
Alignment:
| Q |
187 |
attaacggaacttgaagaaatgtgata-ggccatgtattct |
226 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46819759 |
attaacggaacttgaagaaatgtgatagggccatgtattct |
46819719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University