View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_147 (Length: 240)
Name: NF19103_high_147
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_147 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10693468 - 10693689
Alignment:
| Q |
1 |
ctaggttcttgaaaaaggtgtatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaat |
100 |
Q |
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| T |
10693468 |
ctaggttcttgaaaaaggtgtatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcacgataaaat |
10693567 |
T |
|
| Q |
101 |
agggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10693568 |
agggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaa |
10693667 |
T |
|
| Q |
201 |
agaaactattgaaagggaacca |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10693668 |
agaaactattgaaagggaacca |
10693689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 10707278 - 10707485
Alignment:
| Q |
21 |
tatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatc------atg |
114 |
Q |
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|||||||||||||||||||||| || |||||||||||| |||||||| |||||| |||||| ||||| || |||||| | ||| | ||| ||| |
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| T |
10707278 |
tatttaattcaaatctattgaagtagttggcaagattgatcgcaacctccttctcatatttggacgtagcccaataaaacaaggtctgatcctgatcatg |
10707377 |
T |
|
| Q |
115 |
acaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaa |
214 |
Q |
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| T |
10707378 |
acaagtacatgacaaatgaaccatattgtatatatgataaagtatccaagtgtttcccaattttctggaaagaacatcaacaccaaagaaactattgaaa |
10707477 |
T |
|
| Q |
215 |
gggaacca |
222 |
Q |
| |
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|||||||| |
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| T |
10707478 |
gggaacca |
10707485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 10657453 - 10657566
Alignment:
| Q |
109 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
208 |
Q |
| |
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||||||| |||||||||| |||||||||||| |||||| ||| ||||||||||| ||| |||||| |||| ||||| |||||||| ||||||||||| || |
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| T |
10657453 |
atcatgataagtacatgacaaatgaaccataatgtgtaaatggtaatgtatccaaataatccccatttgtttgggatgaacatcaacaccaaagaaatta |
10657552 |
T |
|
| Q |
209 |
ttgaaagggaacca |
222 |
Q |
| |
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||||||| |||||| |
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| T |
10657553 |
ttgaaagtgaacca |
10657566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 10690215 - 10690343
Alignment:
| Q |
94 |
ataaaatagggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatca |
193 |
Q |
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||||||||| || | ||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||| | ||||| ||||||| |
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| T |
10690215 |
ataaaatagagtctaatcatgattagtacatgaaaaatgaaccatattgtgtatatgataatatatccaaataatccccaattttctgggagcaacatca |
10690314 |
T |
|
| Q |
194 |
tcaccaaagaaactattgaaagggaacca |
222 |
Q |
| |
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|||||| |||| || |||||| |||||| |
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| T |
10690315 |
acaccaatgaaattaatgaaagtgaacca |
10690343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 10698163 - 10698276
Alignment:
| Q |
109 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
208 |
Q |
| |
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|||||||||| | |||| |||||||||||| ||||||||| ||||||||||| ||| ||| ||||| | ||| |||||||||| ||||||||||| || |
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| T |
10698163 |
atcatgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaatta |
10698262 |
T |
|
| Q |
209 |
ttgaaagggaacca |
222 |
Q |
| |
|
|||||||||||||| |
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| T |
10698263 |
ttgaaagggaacca |
10698276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10633796 - 10633976
Alignment:
| Q |
30 |
caaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatcatgacaagtacatgataa |
129 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| || |||| |||| |||| ||||||| | |
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| T |
10633796 |
caaatctattgaagtatttggcaagattggtcgcaacttccttctaatatgtggacgtagcccaataa------------tcattacaaatacatgacta |
10633883 |
T |
|
| Q |
130 |
atgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaacca |
222 |
Q |
| |
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||||||||| |||||||||||| |||||||||| || ||||||| | | || |||||||||||||||||||||| |||||| || |||||| |
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| T |
10633884 |
atgaaccatgttgtgtatatgacaatgtatccaactactccccaacttttaggaaagaacatcatcaccaaagaaattattgagagcgaacca |
10633976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 15240606 - 15240493
Alignment:
| Q |
109 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
208 |
Q |
| |
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|||| ||| |||| || |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |
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| T |
15240606 |
atcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaatta |
15240507 |
T |
|
| Q |
209 |
ttgaaagggaacca |
222 |
Q |
| |
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|||||||||||||| |
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| T |
15240506 |
ttgaaagggaacca |
15240493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 15246907 - 15246824
Alignment:
| Q |
139 |
attgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaacca |
222 |
Q |
| |
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|||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
15246907 |
attgtgcatatgataatgtatccagataatccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaacca |
15246824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 33777673 - 33777472
Alignment:
| Q |
24 |
ttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatcatgacaagta-- |
121 |
Q |
| |
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||||||||||||||||||| ||||||||| || |||||||||| |||||| || | | ||||| | | |||| || || | |||||| ||||| |
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| T |
33777673 |
ttaattcaaatctattgaagtatttggcaggagtggtcgcaacttccttctcatttgtggacgtaccccaacaaaacagtgtctgttcatgagaagtagc |
33777574 |
T |
|
| Q |
122 |
-catgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaac |
220 |
Q |
| |
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||| | ||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||| | |||||| | ||||||||||||||||||||| |||| |
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| T |
33777573 |
acataacaaatgaaccatgctgtgtatatgataatgtatgaacatactccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaac |
33777474 |
T |
|
| Q |
221 |
ca |
222 |
Q |
| |
|
|| |
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|
| T |
33777473 |
ca |
33777472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 33774931 - 33774840
Alignment:
| Q |
128 |
aaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaac----atcatcaccaaagaaactattgaaag |
215 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||| |||| |||| ||||||||||||||||||||| |
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|
| T |
33774931 |
aaatgaaccatatcgtgtatatgataatgtatcctgataatgtccaattgtttgggaggaacatcgatcaacaccaaagaaactattgaaag |
33774840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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