View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_154 (Length: 238)
Name: NF19103_high_154
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_154 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 46905132 - 46905000
Alignment:
| Q |
90 |
aagtctcacattatatgaaaaatgaatgttgagcaacatacaaataaaagaatccacaaacataatgttttaaggttttaagtgaagatgtaatgtctaa |
189 |
Q |
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| T |
46905132 |
aagtctcacattatatgaaaaatgaatgttgagcaacatacaaataaaagaatccacaaacataatgttttaaggttttaggtgaagatgtaatgtctaa |
46905033 |
T |
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| Q |
190 |
ttctacttgtgtgctcaatgatgatgatattcc |
222 |
Q |
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| T |
46905032 |
ttctacttgtgtgcttaatggtgatgatattcc |
46905000 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 46905250 - 46905174
Alignment:
| Q |
28 |
taatgacataataattcaactcaacaaagcaaattatttttggtgtgtcaattattagttataagtctcacattata |
104 |
Q |
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| T |
46905250 |
taatgacataataattcaactcaacaaatcaaattatttttggtgtgtcaattatgagttataagtctcacattata |
46905174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 5692108 - 5692050
Alignment:
| Q |
143 |
ccacaaacataatgttttaaggttttaagtgaagatgtaatgtctaattctacttgtgt |
201 |
Q |
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| T |
5692108 |
ccacatacttaatattttaaggttttgagttaagatgtgatgtctaattctacatgtgt |
5692050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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