View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_155 (Length: 238)

Name: NF19103_high_155
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_155
NF19103_high_155
[»] chr4 (13 HSPs)
chr4 (98-221)||(36636873-36636996)
chr4 (106-216)||(35968352-35968462)
chr4 (124-217)||(38863107-38863200)
chr4 (123-217)||(36909584-36909678)
chr4 (106-218)||(36668544-36668656)
chr4 (118-197)||(35974069-35974155)
chr4 (137-217)||(36656386-36656466)
chr4 (72-104)||(36909758-36909790)
chr4 (72-102)||(36636786-36636816)
chr4 (156-208)||(18364252-18364304)
chr4 (156-208)||(36598621-36598673)
chr4 (72-104)||(36607400-36607432)
chr4 (72-104)||(36643481-36643513)
[»] chr5 (2 HSPs)
chr5 (119-216)||(19658290-19658387)
chr5 (121-216)||(19675131-19675226)
[»] chr8 (1 HSPs)
chr8 (161-216)||(35335890-35335945)
[»] chr1 (1 HSPs)
chr1 (106-182)||(42602818-42602894)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 36636873 - 36636996
Alignment:
Q  98 tcaatatgttagacacaaacatggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatct 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36636873 tcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatgtctccatct 36636972  T
Q  198 cttagacaaaacacaagttctgac 221  Q
    ||||||||||||||||||||||||    
T  36636973 cttagacaaaacacaagttctgac 36636996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 35968462 - 35968352
Alignment:
Q  106 ttagacacaaacatggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagaca 205  Q
    |||||||| ||||||| |||||||||   ||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||||  |||||| || ||||    
T  35968462 ttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggaca 35968363  T
Q  206 aaacacaagtt 216  Q
    |||| ||||||    
T  35968362 aaacgcaagtt 35968352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 38863107 - 38863200
Alignment:
Q  124 aattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttc 217  Q
    ||||| |||||||||||||||||||| | || |||  |||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttc 38863200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 36909678 - 36909584
Alignment:
Q  123 aaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttc 217  Q
    ||||||||||| ||||||||||||||| | ||  ||| ||||||||||||| || ||||||||||||| ||||||||| || |||||||||||||    
T  36909678 aaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtccccatctcttggaaaaaacacaagttc 36909584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 36668544 - 36668656
Alignment:
Q  106 ttagacacaaacatggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagaca 205  Q
    |||||||||||  | | |||||||||||||  ||||||||| || | || |||  |||| |||| |||||||||||||||||||  ||||||||| ||||    
T  36668544 ttagacacaaatgttgtaaattgcttaacataggaaaatctagaagaatgcaatataagggttgaaatacgtttccagagatgttcccatctctttgaca 36668643  T
Q  206 aaacacaagttct 218  Q
    |||||||||||||    
T  36668644 aaacacaagttct 36668656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 35974155 - 35974069
Alignment:
Q  118 atggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaa-------tacgtttccagagatgtctccatct 197  Q
    |||| ||||||||||  ||||||||| || || ||||||||| ||||||||||||       |||||||||||||||||||||||||    
T  35974155 atggcaaattgcttacgagtggaaaagctggaagcatacaacttaagagttggaacttggaatacgtttccagagatgtctccatct 35974069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 36656386 - 36656466
Alignment:
Q  137 tggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttc 217  Q
    ||||||||||||| | ||  || ||||| || ||| ||||||||||||||||| |||||||||| ||||| || |||||||    
T  36656386 tggaaaatcttgaggaatgtaatgtaagggtaggattacgtttccagagatgtttccatctcttggacaacacgcaagttc 36656466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 36909790 - 36909758
Alignment:
Q  72 ttaaaatctttttaaggagttgaggctcaatat 104  Q
    |||||||||||||||||||||||||||||||||    
T  36909790 ttaaaatctttttaaggagttgaggctcaatat 36909758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 36636786 - 36636816
Alignment:
Q  72 ttaaaatctttttaaggagttgaggctcaat 102  Q
    |||||||||||||||||||||||||||||||    
T  36636786 ttaaaatctttttaaggagttgaggctcaat 36636816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 18364304 - 18364252
Alignment:
Q  156 caacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaa 208  Q
    |||| ||||||||||||| |||||||| |||||| |||||||  |||||||||    
T  18364304 caacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaa 18364252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 36598621 - 36598673
Alignment:
Q  156 caacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaa 208  Q
    |||| ||||||||||||| |||||||| |||||| |||||||  |||||||||    
T  36598621 caacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaa 36598673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 36607400 - 36607432
Alignment:
Q  72 ttaaaatctttttaaggagttgaggctcaatat 104  Q
    ||||||| |||||||||||||||||||||||||    
T  36607400 ttaaaatatttttaaggagttgaggctcaatat 36607432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 36643481 - 36643513
Alignment:
Q  72 ttaaaatctttttaaggagttgaggctcaatat 104  Q
    ||||||||||||||||||||||||| |||||||    
T  36643481 ttaaaatctttttaaggagttgaggttcaatat 36643513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 19658290 - 19658387
Alignment:
Q  119 tggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagtt 216  Q
    ||||||||||||| | |||||||||| | || | || |||  |||||||||||||| ||||||||||||  ||||||||| | |||||||||||||||    
T  19658290 tggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtt 19658387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 19675131 - 19675226
Alignment:
Q  121 gaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagtt 216  Q
    ||||||||||| | |||||||||| | || | || |||  |||||||||||||| ||||||||||||  ||||||||| | |||||||||||||||    
T  19675131 gaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtt 19675226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 35335945 - 35335890
Alignment:
Q  161 taagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagtt 216  Q
    |||| ||||||||||||||||| |||||| ||||||| || |||||||| ||||||    
T  35335945 taagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtt 35335890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 42602818 - 42602894
Alignment:
Q  106 ttagacacaaacatggaaaattgcttaacagtggaaaatcttgatgcatacaacgtaagagttggaatacgtttcca 182  Q
    ||||||||||| |||||||| ||||| ||||||| |||  |||| | || |||  ||||||| ||||||||||||||    
T  42602818 ttagacacaaatatggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttcca 42602894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University