View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_160 (Length: 236)
Name: NF19103_high_160
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_160 |
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| [»] chr2 (11 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 30025387 - 30025608
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025387 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30025486 |
T |
|
| Q |
115 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactatnnnnnnnnttgcagtgaaaagggtaattcatacaaaattga |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
30025487 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattga |
30025586 |
T |
|
| Q |
215 |
ttatatccaattatgtctcaac |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
30025587 |
ttatatccaattatgtctcaac |
30025608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 30035310 - 30035089
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30035310 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30035211 |
T |
|
| Q |
115 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactatnnnnnnnnttgcagtgaaaagggtaattcatacaaaattga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
30035210 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattga |
30035111 |
T |
|
| Q |
215 |
ttatatccaattatgtctcaac |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30035110 |
ttatatccaattatgtctcaac |
30035089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 30116735 - 30116514
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116735 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30116636 |
T |
|
| Q |
115 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactatnnnnnnnnttgcagtgaaaagggtaattcatacaaaattga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
30116635 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattga |
30116536 |
T |
|
| Q |
215 |
ttatatccaattatgtctcaac |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
30116535 |
ttatatccaattatgtctcaac |
30116514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 30131492 - 30131271
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30131492 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30131393 |
T |
|
| Q |
115 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactatnnnnnnnnttgcagtgaaaagggtaattcatacaaaattga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
30131392 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattga |
30131293 |
T |
|
| Q |
215 |
ttatatccaattatgtctcaac |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30131292 |
ttatatccaattatgtctcaac |
30131271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 30229448 - 30229227
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229448 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30229349 |
T |
|
| Q |
115 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactatnnnnnnnnttgcagtgaaaagggtaattcatacaaaattga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
30229348 |
atagaagtacgtgtaacaccgcaagatgatcgttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattga |
30229249 |
T |
|
| Q |
215 |
ttatatccaattatgtctcaac |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30229248 |
ttatatccaattatgtctcaac |
30229227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 30236741 - 30236642
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30236741 |
aagacttgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
30236642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 30181863 - 30181754
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||||||||| || | |||||| ||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
30181863 |
aagacatggcttcaaatttccactgctgaggatgttatttgtagtagattgtcccgtgatggaaactttctcacatggagtgttgaacgcaccaaggctc |
30181764 |
T |
|
| Q |
115 |
atagaagtac |
124 |
Q |
| |
|
| || ||||| |
|
|
| T |
30181763 |
agagcagtac |
30181754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 30281982 - 30282077
Alignment:
| Q |
18 |
acatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagct |
113 |
Q |
| |
|
||||| |||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||| ||||| |
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|
| T |
30281982 |
acatggcttcaaatttccactactgccgaagttatttgtaataaattgtcccatgatggaaactttctcacatggagtgttgaatgcacctaagct |
30282077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 30070508 - 30070610
Alignment:
| Q |
16 |
agacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctca |
115 |
Q |
| |
|
||||||| |||||||||||||| | || || |||||||||| || | |||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
30070508 |
agacatggcttcaaatttccacaactgcagaagttatttgtagtagattgtcccgtgatggaaactttctcacatggagtgttgaacgcaccaaagctca |
30070607 |
T |
|
| Q |
116 |
tag |
118 |
Q |
| |
|
||| |
|
|
| T |
30070608 |
tag |
30070610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 30793025 - 30793134
Alignment:
| Q |
15 |
aagacatgacttcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctc |
114 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
30793025 |
aagacatggcttcaaatttccacagctgcagaacttatttgtaatagattgtccaatgatggaaactttctcacatggagcgttgaacgcaccaaagctc |
30793124 |
T |
|
| Q |
115 |
atagaagtac |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
30793125 |
atagaagtac |
30793134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 30177289 - 30177393
Alignment:
| Q |
26 |
tcaaatttccactattgaggacgttatttgtaataaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagctcatagaagtacg |
125 |
Q |
| |
|
|||||||||| ||| | | || |||||||||| || | |||||||||||||||||||||||| |||| ||||||| ||||||||||||| || ||||| |
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|
| T |
30177289 |
tcaaatttccgctactaaagaagttatttgtagtagattgtcccatgatggaaactttctcacatggagtgttgaatgcaccaaagctcagagcagtaca |
30177388 |
T |
|
| Q |
126 |
tgtaa |
130 |
Q |
| |
|
||||| |
|
|
| T |
30177389 |
tgtaa |
30177393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 12629182 - 12629115
Alignment:
| Q |
48 |
gttatttgtaa--taaactgtcccatgatggaaactttctcaaatggtatgttgaacgcaccaaagct |
113 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
12629182 |
gttatttgtaacataaattgtcccatgatggaaactttctcgcatggagtgttgaatgcaccaaagct |
12629115 |
T |
|
Back To:
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