View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_161 (Length: 236)
Name: NF19103_high_161
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_161 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40881329 - 40881114
Alignment:
| Q |
1 |
aatcgtgttttgttttggcagccatgcaatccttgtctatctttcttctgcttttcctggagttgctgaccattggttagtccaaccatttcttagagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40881329 |
aatcgtgttttgttttggcagccatgcaatccttgtctatctttcttctgcttttcctggagttgctgaccattggttagtccaaccatttcttagagta |
40881230 |
T |
|
| Q |
101 |
gctgtagctgaacatgtgtaattgattttgtaaaattggttccggctaaaagtaagttgaacattgaatttgacactaaaaattaattgtatttgtagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
40881229 |
gctgtagctgaacatgtgtaattgattttgtaaaattggttccggctaaaagtaagttgaacagtgaatttgacactaaaaattaattgtatt------t |
40881136 |
T |
|
| Q |
201 |
gcaaaagctccaagttgcagct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40881135 |
gcaaaagctccaagttgcagct |
40881114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 40884401 - 40884338
Alignment:
| Q |
18 |
gcagccatgcaatccttgtctatctttcttctgcttttcctggagttgctgaccattggttagt |
81 |
Q |
| |
|
|||| |||||||| ||| |||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40884401 |
gcagtcatgcaattcttatctatcttgcttctgcatttcctggagttgcacaccattggttagt |
40884338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University