View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_162 (Length: 236)

Name: NF19103_high_162

Description: NF19103

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19103_high_162

[»] chr4 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 103; E-Value: 2e-51

Query Start/End: Original strand, 1 - 221

Target Start/End: Complemental strand, 24996559 - 24996341

Alignment:

Q	1	cttagaaggttttggtttggctccctcttgtacatannnnnnnnnnnnnnaataatatatattattatgagcaagtgacatatgatgagagttccttcag	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|
T	24996559	cttagaaggttttggtttggctccctcttgtacatattttttctttttt-aataatatatattattatgagcaagtgacatatgatgaaagttccttggg	24996461	T

Q	101	ggtgcacacttagttggggtgtctagtctctccttaattaatgtcctccttgctctttattcagctag-nnnnnnnttaaagaacattcttaattcttag	199	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24996460	agtgcagacttagtcggggtgtcta--ctctccttaattaatgtcctccttgctctttattcaactagaaaaaaaattaaagaacattcttaattcttag	24996363	T

Q	200	gaagagtgaaggagggagggag	221	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24996362	gaagcgtgaaggagggagggag	24996341	T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 52 - 93

Target Start/End: Original strand, 28293485 - 28293526

Alignment:

Q	52	ataatatatattattatgagcaagtgacatatgatgagagtt	93	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28293485	ataatatatattattatgagtaagtagcatatgatgagagtt	28293526	T

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