View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_172 (Length: 228)
Name: NF19103_high_172
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_172 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 12829615 - 12829388
Alignment:
| Q |
1 |
caaagccacagttaatgtgttgctcttgatgtcttgcacattacacatcactattgcatatgcatgaaatttgtggctttttctttcaaccatcatggtt |
100 |
Q |
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| T |
12829615 |
caaagccacagttaatgtgttgctcttgatgtcttgcacattacacatcactattgcatatgcatgaaatttgtggctttttctttcaaccatcatggtt |
12829516 |
T |
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| Q |
101 |
attaatgacatctagttccggaagccatggcatgaagattcacaactcgtactatcaaagatgtcaatcaaataagtctcacgttgaagcaacaaataca |
200 |
Q |
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| T |
12829515 |
attaatgacatctagttccggaagccatggcatgaagattcacaactcgtactatcaaagatgtcaatcaaataagtctcacgttgaagcaacaaataca |
12829416 |
T |
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| Q |
201 |
aaccattaccaacgtagcatagtgtcat |
228 |
Q |
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| T |
12829415 |
aaccattaccaacgtagcatagtgtcat |
12829388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 12824561 - 12824426
Alignment:
| Q |
71 |
ttgtggctttttctttcaaccatcatggttattaatgacatctagttccggaagccatggcatgaagattcacaactcgtactatcaaagatgtcaatca |
170 |
Q |
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| T |
12824561 |
ttgtggcattttctttcaactatcatggttattaatgagctctagctccggaagccatgccatgaagattcacaactcctacaatcaaagatgtcgatcg |
12824462 |
T |
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| Q |
171 |
aataagtctcacgttgaagcaacaaatacaaaccat |
206 |
Q |
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| T |
12824461 |
aataagtctcatgttgaagcaacaaatacaaaccat |
12824426 |
T |
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