View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_20 (Length: 461)

Name: NF19103_high_20
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_20
NF19103_high_20
[»] chr7 (10 HSPs)
chr7 (16-444)||(39169263-39169690)
chr7 (214-251)||(47941310-47941347)
chr7 (200-251)||(27517312-27517364)
chr7 (199-239)||(33645991-33646031)
chr7 (199-253)||(46056040-46056095)
chr7 (215-253)||(39907788-39907826)
chr7 (199-251)||(3968787-3968840)
chr7 (208-253)||(48507707-48507752)
chr7 (213-245)||(21453287-21453319)
chr7 (215-255)||(46104349-46104389)
[»] chr4 (8 HSPs)
chr4 (199-264)||(7694040-7694106)
chr4 (196-255)||(42866051-42866111)
chr4 (199-261)||(43372001-43372062)
chr4 (199-261)||(18628573-18628636)
chr4 (298-332)||(47771902-47771936)
chr4 (215-255)||(16200028-16200068)
chr4 (202-253)||(28300332-28300384)
chr4 (202-253)||(50742869-50742921)
[»] chr8 (7 HSPs)
chr8 (202-262)||(42215339-42215400)
chr8 (218-253)||(7646191-7646226)
chr8 (274-332)||(4389850-4389908)
chr8 (211-253)||(38537576-38537618)
chr8 (203-262)||(6509337-6509397)
chr8 (199-250)||(8062317-8062369)
chr8 (215-251)||(32841355-32841391)
[»] chr6 (10 HSPs)
chr6 (199-255)||(33887813-33887870)
chr6 (199-252)||(7945914-7945967)
chr6 (217-251)||(769126-769160)
chr6 (219-256)||(7446530-7446567)
chr6 (199-239)||(19275666-19275707)
chr6 (200-255)||(1401092-1401148)
chr6 (219-251)||(2735056-2735088)
chr6 (216-264)||(4246384-4246432)
chr6 (211-251)||(10860958-10860998)
chr6 (199-258)||(28088252-28088312)
[»] chr3 (6 HSPs)
chr3 (202-254)||(24785189-24785242)
chr3 (215-253)||(25447291-25447329)
chr3 (203-262)||(1816559-1816619)
chr3 (215-251)||(22203417-22203453)
chr3 (214-262)||(38462257-38462305)
chr3 (203-250)||(41724199-41724247)
[»] chr2 (11 HSPs)
chr2 (199-255)||(42419980-42420037)
chr2 (199-262)||(35486393-35486457)
chr2 (216-260)||(33931618-33931662)
chr2 (211-262)||(13866865-13866916)
chr2 (196-237)||(42817403-42817445)
chr2 (214-251)||(39621938-39621975)
chr2 (218-262)||(9551555-9551599)
chr2 (202-241)||(10884554-10884594)
chr2 (215-255)||(33319859-33319899)
chr2 (199-238)||(36852472-36852512)
chr2 (283-331)||(43965244-43965292)
[»] chr5 (14 HSPs)
chr5 (199-245)||(8651383-8651429)
chr5 (212-262)||(9106797-9106847)
chr5 (199-264)||(17368650-17368716)
chr5 (283-332)||(26516205-26516254)
chr5 (286-333)||(31687931-31687978)
chr5 (199-245)||(32408622-32408669)
chr5 (203-245)||(9174809-9174851)
chr5 (283-333)||(20982249-20982299)
chr5 (199-255)||(4619690-4619747)
chr5 (199-243)||(30217077-30217122)
chr5 (280-332)||(42582818-42582871)
chr5 (199-262)||(16889711-16889775)
chr5 (218-262)||(18857450-18857494)
chr5 (283-331)||(40534102-40534150)
[»] chr1 (6 HSPs)
chr1 (199-255)||(35017559-35017616)
chr1 (215-251)||(7137045-7137081)
chr1 (202-253)||(7472296-7472348)
chr1 (199-253)||(6279384-6279439)
chr1 (283-332)||(47885122-47885171)
chr1 (213-261)||(33527192-33527240)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 39169263 - 39169690
Alignment:
Q  16 atgcacttaagccaacaattcacagcagaaagaagctgtaaaacaaacaaattctcatatacattattcctaaaggatgatctgttcaaacacataaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169263 atgcacttaagccaacaattcacagcagaaagaagctgtaaaacaaacaaattctcatatacattattcctaaaggatgatctgttcaaacacataaagg 39169362  T
Q  116 accttttggcttgacttattcaagtttatctaacggcatagccacttgttacactattcaggagaacttatgaaaaaacctacttccataagctctcagg 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169363 accttttggcttgacttattcaagtttatctaccggcatagccacttgttacactattcaggagaacttatgaaaaaacctacttccataagctctcagg 39169462  T
Q  216 atagcttatgaaaacagtttatagattatacaaaaacagtctgacttcannnnnnncttgtgtaatggaaatagcttattcgtaagcgctcatatgataa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  39169463 atagcttatgaaaacagtttatagattatacaaaaacagtctgacttca-ttttttcttgtgtaatggaaatagcttattcgtaagcgctcatatgataa 39169561  T
Q  316 gcgcttatgctataagcagctgatttcagaactaagttccaaacagagaaaataaacatgcacaaattctttgaataagttgatannnnnnnataagaat 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  39169562 gcgcttatgctataagcagctgatttcagaactaagttccaaacagagaaaataaacatgcacaaattctttgaataagttgatatttttttataagaat 39169661  T
Q  416 ttattcagaacctacgcactcatctatct 444  Q
    |||||||||||||||||||||||||||||    
T  39169662 ttattcagaacctacgcactcatctatct 39169690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 47941347 - 47941310
Alignment:
Q  214 ggatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  47941347 ggatagcttatgaaaacagtttatagattatactaaaa 47941310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 27517312 - 27517364
Alignment:
Q  200 tccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    ||||||||||||| |||||| |||||||||||||||| ||| |||||||||||    
T  27517312 tccataagctctccaggataacttatgaaaacagtttgtagcttatacaaaaa 27517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 33645991 - 33646031
Alignment:
Q  199 ttccataagctctcaggatagcttatgaaaacagtttatag 239  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  33645991 ttccataagctctccagatagcttatgaaaacagtttatag 33646031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 46056040 - 46056095
Alignment:
Q  199 ttccataagctct-caggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||||||||||| | |||||||||||||||||| ||||||| ||| |||||||||    
T  46056040 ttccataagctctacgggatagcttatgaaaacaatttatagcttacacaaaaaca 46056095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 39907826 - 39907788
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  39907826 gatagtttatgaaaacagtttatagcttatacaaaaaca 39907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 3968787 - 3968840
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||    
T  3968787 ttccataaactctccaggatagcttatgaaaatagcttatatattatacaaaaa 3968840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 48507752 - 48507707
Alignment:
Q  208 ctctcaggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||    
T  48507752 ctctaaggatggcttatgaaaacagtttatagcatatacaaaaaca 48507707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 21453319 - 21453287
Alignment:
Q  213 aggatagcttatgaaaacagtttatagattata 245  Q
    ||||||||||||||||||||||||||| |||||    
T  21453319 aggatagcttatgaaaacagtttatagcttata 21453287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 46104349 - 46104389
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    |||| |||||||||||||||||||| |||||| ||||||||    
T  46104349 gataacttatgaaaacagtttatagcttatacgaaaacagt 46104389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 7694040 - 7694106
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 264  Q
    |||||||| ||||| |||||| ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  7694040 ttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgacttca 7694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 42866111 - 42866051
Alignment:
Q  196 tacttccataagctctca-ggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    |||||||||||||||||| ||||||||||||||||||  |||||| ||||| |||||||||    
T  42866111 tacttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagt 42866051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 43372001 - 43372062
Alignment:
Q  199 ttccataagctctcaggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 261  Q
    |||||||||||||  ||||||||||||||| |||||||||| ||||| ||||||||| |||||    
T  43372001 ttccataagctctt-ggatagcttatgaaatcagtttatagcttatataaaaacagtttgact 43372062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 18628573 - 18628636
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 261  Q
    |||||||||||||| | |||| |||||||||||||||||||  ||||| ||||||||| |||||    
T  18628573 ttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgact 18628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 47771936 - 47771902
Alignment:
Q  298 taagcgctcatatgataagcgcttatgctataagc 332  Q
    |||||||| ||||||||||||||||||||||||||    
T  47771936 taagcgcttatatgataagcgcttatgctataagc 47771902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 16200028 - 16200068
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    |||||||||||||||||| ||||||  ||||||||||||||    
T  16200028 gatagcttatgaaaacagcttatagcatatacaaaaacagt 16200068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 28300332 - 28300384
Alignment:
Q  202 cataagctct-caggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    |||||||||| || |||||| |||||||| ||||||||| |||||||||||||    
T  28300332 cataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaaca 28300384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 50742869 - 50742921
Alignment:
Q  202 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||||||||| |||||||||||||||||||  ||||  ||||||||||||||    
T  50742869 cataagctctccaggatagcttatgaaaacaagttatttattatacaaaaaca 50742921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 42215339 - 42215400
Alignment:
Q  202 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||||| ||||||    
T  42215339 cataagctctccaggatagcatatgaaaataggttatagattatacaaaaacagtttgactt 42215400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 7646226 - 7646191
Alignment:
Q  218 agcttatgaaaacagtttatagattatacaaaaaca 253  Q
    |||||||||| |||||||||||||||||||||||||    
T  7646226 agcttatgaagacagtttatagattatacaaaaaca 7646191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 4389908 - 4389850
Alignment:
Q  274 tgtgtaatggaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 332  Q
    ||||| || |||||||||||||| || | ||||||||||||||| ||| ||||||||||    
T  4389908 tgtgttatagaaatagcttattcatatgtgctcatatgataagcacttctgctataagc 4389850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 38537618 - 38537576
Alignment:
Q  211 tcaggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||    
T  38537618 tcaggatagtttatgaaagcagcttatagattatacaaaaaca 38537576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 6509337 - 6509397
Alignment:
Q  203 ataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    |||||||||| |||||||||||||||||||| |||||| ||||| ||| ||| | ||||||    
T  6509337 ataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactt 6509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 8062369 - 8062317
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaa 250  Q
    |||||||| ||||| | |||||||||||||||||| |||||| ||||||||||    
T  8062369 ttccataatctctctaagatagcttatgaaaacagcttatagcttatacaaaa 8062317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 32841355 - 32841391
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    |||||||||||||||||| |||||| |||||||||||    
T  32841355 gatagcttatgaaaacagcttatagcttatacaaaaa 32841391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 33887870 - 33887813
Alignment:
Q  199 ttccataagc-tctcaggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||    
T  33887870 ttccataagcatttcaggatagcttatgaaaacagtttattgattatactaaaacagt 33887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 7945914 - 7945967
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaac 252  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  7945914 ttccataagctctccaggatagct-atgaaaacaggttatagattatacaaaaac 7945967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 769160 - 769126
Alignment:
Q  217 tagcttatgaaaacagtttatagattatacaaaaa 251  Q
    ||||||||||||||||||||||| |||||||||||    
T  769160 tagcttatgaaaacagtttatagcttatacaaaaa 769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 7446530 - 7446567
Alignment:
Q  219 gcttatgaaaacagtttatagattatacaaaaacagtc 256  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  7446530 gcttatgaaaacagcttatagcttatacaaaaacagtc 7446567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 19275666 - 19275707
Alignment:
Q  199 ttccataagctct-caggatagcttatgaaaacagtttatag 239  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  19275666 ttccataagctcttcatgatagcttatgaaaacagtttatag 19275707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 1401148 - 1401092
Alignment:
Q  200 tccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    ||||||||||||| | |||||||||||||||||| |||||| |||||| ||| ||||    
T  1401148 tccataagctctccatgatagcttatgaaaacagcttatagcttatactaaagcagt 1401092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 2735088 - 2735056
Alignment:
Q  219 gcttatgaaaacagtttatagattatacaaaaa 251  Q
    |||||||||||||| ||||||||||||||||||    
T  2735088 gcttatgaaaacagcttatagattatacaaaaa 2735056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 4246432 - 4246384
Alignment:
Q  216 atagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 264  Q
    ||||||||||||||||| ||||||||||||  ||||||  |||||||||    
T  4246432 atagcttatgaaaacagcttatagattatatgaaaacatactgacttca 4246384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 10860998 - 10860958
Alignment:
Q  211 tcaggatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  10860998 tcaggatagcttatgaaaatagcttatagattatacgaaaa 10860958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 28088252 - 28088312
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctg 258  Q
    |||||| ||||||| | ||||||||||||||||||||||||| |||||  |||||| ||||    
T  28088252 ttccatgagctctccatgatagcttatgaaaacagtttatagcttatatgaaaacaatctg 28088312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 24785242 - 24785189
Alignment:
Q  202 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacag 254  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  24785242 cataagctctcgaggatagcttatgaaaacacgttatagattatacaaaaacag 24785189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 25447291 - 25447329
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25447291 gatagcttatgaaaacagtttatagcttatacaaaaaca 25447329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 1816619 - 1816559
Alignment:
Q  203 ataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    |||||||||| || ||||||||||||||||  |||||  ||||||||||||||| ||||||    
T  1816619 ataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactt 1816559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 22203453 - 22203417
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22203453 gatagcttatgaaaacaacttatagattatacaaaaa 22203417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 38462305 - 38462257
Alignment:
Q  214 ggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    ||||||||||||||||||||||||||  ||||  |||||||| ||||||    
T  38462305 ggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactt 38462257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 41724247 - 41724199
Alignment:
Q  203 ataagctctca-ggatagcttatgaaaacagtttatagattatacaaaa 250  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  41724247 ataagctctcaaggatagctgatgaaaacagtttatagcttatataaaa 41724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 42420037 - 42419980
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||    
T  42420037 ttccataagctatccaggatagcttatgaaaatagcttatagattatacaaaaacagt 42419980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 35486393 - 35486457
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    |||||||| ||||| ||||||||||  |||||||| |||||||||||||||||||||| ||||||    
T  35486393 ttccataacctctccaggatagcttgcgaaaacagcttatagattatacaaaaacagtttgactt 35486457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 33931618 - 33931662
Alignment:
Q  216 atagcttatgaaaacagtttatagattatacaaaaacagtctgac 260  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||    
T  33931618 atagcttatgaaaacagcttatagcttatacaaaaacaatctgac 33931662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 13866916 - 13866865
Alignment:
Q  211 tcaggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    ||||||||||| ||||||| || |||||||||||| ||||||||| ||||||    
T  13866916 tcaggatagctaatgaaaagagcttatagattatataaaaacagtttgactt 13866865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 42817403 - 42817445
Alignment:
Q  196 tacttccataagctct-caggatagcttatgaaaacagtttat 237  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  42817403 tacttccataagctcttcagaatagcttatgaaaacagtttat 42817445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 39621975 - 39621938
Alignment:
Q  214 ggatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  39621975 ggataacttatgaaaacagcttatagattatacaaaaa 39621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 9551599 - 9551555
Alignment:
Q  218 agcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    |||||||||||| || |||||| ||||||||||||||| ||||||    
T  9551599 agcttatgaaaataggttatagtttatacaaaaacagtttgactt 9551555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 10884554 - 10884594
Alignment:
Q  202 cataagctctc-aggatagcttatgaaaacagtttatagat 241  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  10884554 cataagctctctaggatagcttatgaaaacagcttatagat 10884594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 33319859 - 33319899
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  33319859 gatagtttatgaaaacagtttatagtatatacaaaaacagt 33319899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 36852512 - 36852472
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttata 238  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  36852512 ttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 43965244 - 43965292
Alignment:
Q  283 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataag 331  Q
    |||||||||||||| ||| | || |||||||||| ||||||||||||||    
T  43965244 gaaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 8651383 - 8651429
Alignment:
Q  199 ttccataagctctcaggatagcttatgaaaacagtttatagattata 245  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||    
T  8651383 ttccataagctcccagaatagcttatgaaaacagtttatagcttata 8651429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 9106847 - 9106797
Alignment:
Q  212 caggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    ||||||| |||||||||| || |||||||||||||||||||||| ||||||    
T  9106847 caggataacttatgaaaatagcttatagattatacaaaaacagtttgactt 9106797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 17368716 - 17368650
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 264  Q
    |||||||| ||||| | |||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  17368716 ttccataacctctccaagatagcttatgaaaacaacttatagattacacaaaaacagtttgacttca 17368650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 26516254 - 26516205
Alignment:
Q  283 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 332  Q
    |||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  26516254 gaaatagcttatacataagcacttatatgataagcgcttatgctataagc 26516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 31687978 - 31687931
Alignment:
Q  286 atagcttattcgtaagcgctcatatgataagcgcttatgctataagca 333  Q
    ||||||||||| ||||| || ||||||||||||| |||||||||||||    
T  31687978 atagcttattcataagcacttatatgataagcgcctatgctataagca 31687931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 32408622 - 32408669
Alignment:
Q  199 ttccataagctct-caggatagcttatgaaaacagtttatagattata 245  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  32408622 ttccataagctcttcaggatagcttatgaaaatagtttatagcttata 32408669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 9174851 - 9174809
Alignment:
Q  203 ataagctctcaggatagcttatgaaaacagtttatagattata 245  Q
    |||||||| ||| |||||||||||||||||||||||| |||||    
T  9174851 ataagctcccagaatagcttatgaaaacagtttatagcttata 9174809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 20982249 - 20982299
Alignment:
Q  283 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagca 333  Q
    |||||||||||| | ||||| || ||||||||||| |||||||||||||||    
T  20982249 gaaatagcttatacataagcacttatatgataagcacttatgctataagca 20982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 4619747 - 4619690
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    ||||||||| |||| | ||||||||||||| ||||||||||||||||| | |||||||    
T  4619747 ttccataagttctccatgatagcttatgaagacagtttatagattatatagaaacagt 4619690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 30217122 - 30217077
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagatta 243  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  30217122 ttccataagctctccaggatagcttatgaaagcagcttatagatta 30217077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 42582871 - 42582818
Alignment:
Q  280 atggaaatagcttattcgtaagcgctcat-atgataagcgcttatgctataagc 332  Q
    ||||||||||||||| | |||||||| || ||||||| ||||||||||||||||    
T  42582871 atggaaatagcttatacataagcgcttattatgataaacgcttatgctataagc 42582818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 16889775 - 16889711
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    |||||||| ||||| || ||||||||||||||||| |||||| || || ||||||||| ||||||    
T  16889775 ttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgactt 16889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 18857450 - 18857494
Alignment:
Q  218 agcttatgaaaacagtttatagattatacaaaaacagtctgactt 262  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||    
T  18857450 agcttatgaaaacagcttatagattatagaaaaacaatttgactt 18857494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 40534150 - 40534102
Alignment:
Q  283 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataag 331  Q
    |||||||||||| | ||||  || |||||||||||||||||||||||||    
T  40534150 gaaatagcttatacataagtccttatatgataagcgcttatgctataag 40534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 35017616 - 35017559
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 255  Q
    |||||||||||||| |||| |||||||||||||||  |||||||||||| ||||||||    
T  35017616 ttccataagctctccaggacagcttatgaaaacagcatatagattatacgaaaacagt 35017559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 7137045 - 7137081
Alignment:
Q  215 gatagcttatgaaaacagtttatagattatacaaaaa 251  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7137045 gatagcttatgaaaacagcttatagattatacaaaaa 7137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 7472348 - 7472296
Alignment:
Q  202 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    ||||||||||| | ||||||||||| |||||| ||||||||||||||||||||    
T  7472348 cataagctctccaagatagcttatggaaacagcttatagattatacaaaaaca 7472296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 6279439 - 6279384
Alignment:
Q  199 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 253  Q
    |||||||||||||| ||||||||||||||||| |||||| || |||||| ||||||    
T  6279439 ttccataagctctctaggatagcttatgaaaatagtttaaagcttatacgaaaaca 6279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 47885122 - 47885171
Alignment:
Q  283 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 332  Q
    |||||| ||||||| |||||  | ||||||||||||||||||||||||||    
T  47885122 gaaataacttattcataagcaattatatgataagcgcttatgctataagc 47885171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 33527192 - 33527240
Alignment:
Q  213 aggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 261  Q
    |||||| ||||||||||||| ||||||||||||  |||||||| |||||    
T  33527192 aggataacttatgaaaacagcttatagattatatgaaaacagtttgact 33527240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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