View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_25 (Length: 446)

Name: NF19103_high_25
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_25
NF19103_high_25
[»] chr8 (18 HSPs)
chr8 (73-333)||(14628358-14628618)
chr8 (75-169)||(24114303-24114397)
chr8 (86-169)||(29382382-29382465)
chr8 (86-169)||(14528144-14528227)
chr8 (75-146)||(24110699-24110770)
chr8 (86-169)||(24269593-24269675)
chr8 (88-166)||(24904630-24904708)
chr8 (86-166)||(17976614-17976694)
chr8 (86-169)||(34497110-34497193)
chr8 (75-169)||(13315013-13315106)
chr8 (87-133)||(26008019-26008065)
chr8 (86-163)||(5850936-5851013)
chr8 (83-166)||(15238791-15238874)
chr8 (86-169)||(19786726-19786809)
chr8 (398-428)||(14628683-14628713)
chr8 (86-135)||(30235372-30235421)
chr8 (98-159)||(30783772-30783833)
chr8 (101-169)||(17101914-17101982)
[»] chr4 (20 HSPs)
chr4 (75-169)||(13128895-13128989)
chr4 (75-169)||(19562199-19562293)
chr4 (86-163)||(9052669-9052745)
chr4 (86-166)||(17671997-17672077)
chr4 (86-169)||(21323896-21323979)
chr4 (91-169)||(13908854-13908932)
chr4 (91-169)||(20315000-20315078)
chr4 (76-169)||(12578287-12578380)
chr4 (86-163)||(14648890-14648966)
chr4 (86-169)||(13692690-13692773)
chr4 (88-166)||(19929699-19929777)
chr4 (93-169)||(7582299-7582375)
chr4 (72-135)||(9737564-9737627)
chr4 (86-133)||(12318428-12318475)
chr4 (91-146)||(17709757-17709812)
chr4 (86-135)||(22357590-22357639)
chr4 (86-146)||(17951340-17951400)
chr4 (86-146)||(17955192-17955252)
chr4 (93-169)||(19374834-19374909)
chr4 (86-122)||(20829806-20829842)
[»] chr2 (13 HSPs)
chr2 (75-170)||(31804920-31805015)
chr2 (76-169)||(15339223-15339316)
chr2 (77-165)||(29719256-29719344)
chr2 (74-163)||(25888247-25888336)
chr2 (86-169)||(45553125-45553208)
chr2 (86-166)||(12953318-12953398)
chr2 (90-169)||(17743497-17743576)
chr2 (86-169)||(20174656-20174739)
chr2 (87-133)||(8503127-8503173)
chr2 (76-169)||(17349343-17349434)
chr2 (74-166)||(25618540-25618631)
chr2 (90-146)||(27909163-27909219)
chr2 (86-166)||(32085458-32085538)
[»] chr7 (37 HSPs)
chr7 (75-169)||(23099973-23100067)
chr7 (74-169)||(2350768-2350863)
chr7 (86-169)||(5530016-5530099)
chr7 (86-166)||(10587048-10587128)
chr7 (86-165)||(11221189-11221268)
chr7 (86-169)||(16297841-16297924)
chr7 (75-169)||(2563802-2563895)
chr7 (76-169)||(3329679-3329772)
chr7 (86-166)||(7318268-7318348)
chr7 (102-166)||(8313419-8313483)
chr7 (83-166)||(9500436-9500519)
chr7 (90-169)||(18369001-18369080)
chr7 (83-169)||(22339332-22339421)
chr7 (75-165)||(6042445-6042534)
chr7 (75-169)||(9731648-9731742)
chr7 (76-169)||(5108551-5108643)
chr7 (93-169)||(8979027-8979103)
chr7 (86-166)||(9574402-9574482)
chr7 (86-166)||(9864350-9864430)
chr7 (87-163)||(10937598-10937674)
chr7 (87-122)||(5047454-5047489)
chr7 (90-169)||(8054510-8054589)
chr7 (86-149)||(15869590-15869653)
chr7 (76-169)||(4785822-4785914)
chr7 (76-169)||(4818822-4818914)
chr7 (86-163)||(10584513-10584590)
chr7 (86-166)||(1584540-1584618)
chr7 (86-122)||(1814110-1814146)
chr7 (87-163)||(9916562-9916638)
chr7 (87-163)||(9924474-9924550)
chr7 (93-169)||(13759881-13759957)
chr7 (87-163)||(18449238-18449314)
chr7 (114-166)||(18467474-18467526)
chr7 (86-122)||(19153293-19153329)
chr7 (86-122)||(20752692-20752728)
chr7 (86-166)||(21230307-21230387)
chr7 (89-169)||(31492928-31493008)
[»] chr6 (19 HSPs)
chr6 (76-169)||(23143707-23143800)
chr6 (86-169)||(21907427-21907510)
chr6 (79-169)||(17729140-17729230)
chr6 (86-169)||(9726017-9726100)
chr6 (75-167)||(12183354-12183446)
chr6 (76-133)||(14079501-14079558)
chr6 (76-169)||(21672456-21672549)
chr6 (86-169)||(19244580-19244663)
chr6 (86-169)||(22567835-22567918)
chr6 (98-169)||(23645788-23645859)
chr6 (86-169)||(25927324-25927407)
chr6 (75-133)||(5624624-5624682)
chr6 (92-169)||(9516786-9516863)
chr6 (76-169)||(21679872-21679965)
chr6 (93-169)||(23844486-23844562)
chr6 (108-163)||(22410354-22410409)
chr6 (83-132)||(20002440-20002489)
chr6 (86-170)||(4339730-4339814)
chr6 (86-122)||(15466365-15466401)
[»] chr3 (17 HSPs)
chr3 (75-169)||(21301902-21301996)
chr3 (85-166)||(10744896-10744977)
chr3 (76-169)||(41508352-41508445)
chr3 (86-169)||(12805911-12805994)
chr3 (86-169)||(21325335-21325418)
chr3 (83-169)||(3116440-3116525)
chr3 (74-169)||(5508319-5508413)
chr3 (92-169)||(22349410-22349487)
chr3 (86-166)||(10917913-10917993)
chr3 (89-165)||(12411149-12411225)
chr3 (90-169)||(4650231-4650309)
chr3 (86-165)||(8319035-8319113)
chr3 (86-169)||(31286037-31286118)
chr3 (75-133)||(16245786-16245844)
chr3 (91-169)||(19908307-19908385)
chr3 (76-169)||(2167638-2167730)
chr3 (87-163)||(28728940-28729016)
[»] scaffold0622 (1 HSPs)
scaffold0622 (86-169)||(723-806)
[»] chr1 (20 HSPs)
chr1 (90-169)||(14779564-14779643)
chr1 (76-169)||(17359147-17359240)
chr1 (76-169)||(21449074-21449167)
chr1 (90-169)||(15543987-15544066)
chr1 (90-169)||(25405651-25405730)
chr1 (86-144)||(27117764-27117822)
chr1 (86-166)||(9787903-9787983)
chr1 (90-169)||(12208600-12208679)
chr1 (86-169)||(21847629-21847711)
chr1 (86-169)||(26648992-26649074)
chr1 (92-169)||(17610277-17610354)
chr1 (86-146)||(16359866-16359925)
chr1 (86-166)||(23038036-23038115)
chr1 (86-169)||(3591674-3591757)
chr1 (90-165)||(18736265-18736340)
chr1 (83-133)||(22664198-22664248)
chr1 (76-169)||(13345357-13345450)
chr1 (85-122)||(32383066-32383103)
chr1 (86-166)||(24267806-24267886)
chr1 (85-133)||(24281271-24281319)
[»] scaffold0035 (1 HSPs)
scaffold0035 (89-169)||(69911-69991)
[»] scaffold0008 (1 HSPs)
scaffold0008 (86-162)||(54855-54931)
[»] chr5 (14 HSPs)
chr5 (75-167)||(25402360-25402452)
chr5 (90-169)||(15375903-15375982)
chr5 (77-169)||(25550525-25550617)
chr5 (86-166)||(24852196-24852276)
chr5 (90-169)||(24140442-24140520)
chr5 (83-122)||(24267022-24267061)
chr5 (83-122)||(24343653-24343692)
chr5 (86-170)||(15690773-15690856)
chr5 (92-169)||(17431884-17431961)
chr5 (87-144)||(23380303-23380360)
chr5 (86-122)||(15469931-15469967)
chr5 (86-166)||(17171577-17171657)
chr5 (87-163)||(17185459-17185535)
chr5 (90-122)||(20744879-20744911)
[»] scaffold0005 (1 HSPs)
scaffold0005 (86-163)||(168326-168402)
[»] scaffold0650 (1 HSPs)
scaffold0650 (86-169)||(6282-6365)
[»] scaffold0016 (1 HSPs)
scaffold0016 (87-144)||(12105-12162)
[»] scaffold0638 (1 HSPs)
scaffold0638 (109-169)||(844-904)
[»] scaffold0136 (1 HSPs)
scaffold0136 (86-122)||(15533-15569)
[»] scaffold0001 (1 HSPs)
scaffold0001 (86-166)||(81482-81561)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 73 - 333
Target Start/End: Original strand, 14628358 - 14628618
Alignment:
Q  73 gtttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaacac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  14628358 gtttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagatattgtcgtttcgttcaacac 14628457  T
Q  173 tatcagtgtaaannnnnnnnattcatacattcattcaataatgtgatatcaaatgatttaatgattttaaacacataatattgatgtgtcaaacaatcat 272  Q
    |||| |||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628458 tatcggtgtaaattttttttattcatacattcattcaataatgtgctatcaaatgatttaatgattttaaacacataatattgatgtgtcaaacaatcat 14628557  T
Q  273 ttgatgcatttataaagtattcttacattgataatgtaaacaagttaaatcaaattgatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628558 ttgatgcatttataaagtattcttacattgataatgtaaacaagttaaatcaaattgatat 14628618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 24114397 - 24114303
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| ||||||||||| ||||||||  ||||||||||||||| |||||||||| | ||| |||||||||| ||||||||||||||||||    
T  24114397 ttgatgtgcggattaggcaagtgtaccaaattgtttaccaagtaataaaatgataagtagagtatcgtatccgcagggattgtcgtttcgtccaa 24114303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 29382465 - 29382382
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||| |||||||||||| |||||    
T  29382465 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacagggattgtcgtttcatccaa 29382382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 14528144 - 14528227
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| | ||||||| |||||||||||||||  ||||| ||| | ||| |||||| || |||||||||||||||||||    
T  14528144 attaggcaagtgtgccaaatcgtttaccaagtaataaagtgatacgtagagtatcgtatccacatagattgtcgtttcgtccaa 14528227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 24110770 - 24110699
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    |||||||||| |||| |||||| || |||||||||||||||||||||| |||||||||| | ||| ||||||    
T  24110770 ttgatgtgcggattatgcaagtgtatcaaatcatttaccaagtaataaaatgataagtagagtatcgtatcc 24110699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 24269593 - 24269675
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| |||||||| ||||||||||||||||  || |||||| | ||| |||||| ||| ||||||||||||||||||    
T  24269593 attaggcaagtgtaccaaattatttaccaagtaataaagtg-taagtagagtatcgtatccacagggattgtcgtttcgtccaa 24269675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 24904630 - 24904708
Alignment:
Q  88 taggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||| |||||||||||||||||| ||||||  ||||||||| | |||  ||||| ||| |||||||||||||||    
T  24904630 taggcaagtgtaccaaatcatttaccaaataataaagtgataagtagagtatcatatccacagtgattgtcgtttcgtc 24904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 17976614 - 17976694
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| | |||||||||||| ||||||||||  ||||||||| | ||| |||||| || ||||| ||||||||||    
T  17976614 attaggcaagtgtgccaaatcatttatcaagtaataaagtgataagtagagtatcgtatccacaaagattttcgtttcgtc 17976694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 34497110 - 34497193
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| || |||||| |||||||||||||||  |||| |||| | ||| ||||||  ||||| |||||||||||||||    
T  34497110 attaggcaagtctatcaaatcgtttaccaagtaataaagtgattagtagagtatcgtatccatagagactgtcgtttcgtccaa 34497193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 13315106 - 13315013
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| |||||| |||| ||||| |||||||||||||||||||  ||||||||| | ||| |||||| ||  |||| | |||||||||||    
T  13315106 ttgatgtgcggattagg-aagtgtaccagatcatttaccaagtaataaagtgataagtatagtatcgtatccacatggatttttgtttcgtccaa 13315013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 26008019 - 26008065
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||    
T  26008019 ttaggcaagtgtaccaaatcatttaccaagtaataaagtgataagta 26008065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 5850936 - 5851013
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||| ||||| |||| |||| |||||||||||||||  ||||||||| | ||| |||||| || |||||||||||||    
T  5850936 attagtcaagtgtacctaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttc 5851013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 15238791 - 15238874
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||||||||||| || |||||  |||||||||||| || |||||||||| | ||| |||||| ||   ||||||||||||||    
T  15238791 cgaattaggcaagtgtatcaaattgtttaccaagtaagaaaatgataagtagattatcgtatccacatgaattgtcgtttcgtc 15238874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 19786726 - 19786809
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||| ||||||||| |||||||||||||||  ||| ||||||| |||  |||||  || || |||||||||||||||    
T  19786726 attagacaagtataccaaatcgtttaccaagtaataaagtgacaagtaaagtatcatatccatagggactgtcgtttcgtccaa 19786809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 14628683 - 14628713
Alignment:
Q  398 caaccatacatggatgggagagtaactcttt 428  Q
    |||||||||||||||||||||||||||||||    
T  14628683 caaccatacatggatgggagagtaactcttt 14628713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 30235372 - 30235421
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaa 135  Q
    ||||||||||| ||| ||||| |||||||||||||||  |||||||||||    
T  30235372 attaggcaagtgtacaaaatcgtttaccaagtaataaagtgataagtaaa 30235421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 30783833 - 30783772
Alignment:
Q  98 taccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcg 159  Q
    ||||||||| |||||||||||||||  ||||||||| | ||| |||||| || |||||||||    
T  30783833 taccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatagattgtcg 30783772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 17101982 - 17101914
Alignment:
Q  101 caaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| |||||||||||||||  ||||||||| | ||| ||||||  || |||||||||||| |||||    
T  17101982 caaatcgtttaccaagtaataaagtgataagtagagtatcgtatccatagggattgtcgtttcatccaa 17101914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 13128989 - 13128895
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||| | ||||||||||  || ||||||||||||||||||    
T  13128989 ttgatgttcgaattaggcaagtgtaccaaatcgtttaccaagtaataaaatgataagtagagtattgtatccatagggattgtcgtttcgtccaa 13128895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 19562293 - 19562199
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||  ||||||||||| ||| || ||| ||   ||||||||||| |||||    
T  19562293 ttgatgtgcggattaagcaagtgtaccaaatcatttaccaagtaataaagtgataagtaaagtatcgtgtccacaagtattgtcgtttcatccaa 19562199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 9052669 - 9052745
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||||| ||||||| |||||    
T  9052669 attaggcaagtgtaccaaatcatttaccaagtaataaaatg-taagtagagtatcgtatccgcaaagattgttgtttc 9052745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 17671997 - 17672077
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | |||||||||| ||  |||||| ||||||||    
T  17671997 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatccacatggattgttgtttcgtc 17672077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 21323979 - 21323896
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||| ||||| |||||||| ||||||| |||| |||| | ||| |||||| || |||||||||||||||||||    
T  21323979 attaggcaagtgtactaaatcgtttaccaaataataatgtgatcagtagagtatcgtatccacatagattgtcgtttcgtccaa 21323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 13908854 - 13908932
Alignment:
Q  91 gcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||||||||    
T  13908854 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtttcgtccaa 13908932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 20315000 - 20315078
Alignment:
Q  91 gcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| ||||||||| |||||||||||||||  ||||||||| |||||  ||||| ||  ||||||||||||||||||    
T  20315000 gcaagtgtaccaaatcgtttaccaagtaataaattgataagtagaatatcatatccacaaggattgtcgtttcgtccaa 20315078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 12578380 - 12578287
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| | ||||||||||| |||||||||||||||||| ||||||  |||||| || | ||| |||||| ||  ||||||||||| ||||||    
T  12578380 tgatgtgaggattaggcaagtgtaccaaatcatttaccaaataataaagtgataattagagtatcgtatccacatggattgtcgttttgtccaa 12578287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 14648890 - 14648966
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||| ||||||||||||    
T  14648890 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacag-gattgtcgtttc 14648966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 13692773 - 13692690
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | |||  ||||| ||  ||||||||||||| ||||    
T  13692773 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtttcgaccaa 13692690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 19929777 - 19929699
Alignment:
Q  88 taggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||| |||||||||||||||||||||| ||  |||||| || | ||| |||||| ||  |||||||||||||||    
T  19929777 taggcaagtgtaccaaatcatttaccaagtaacaaagtgataaatagagtatcgtatccacatggattgtcgtttcgtc 19929699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 7582299 - 7582375
Alignment:
Q  93 aagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||| |||||||||||||||||||||||||  ||||||||| | |||  ||||| ||  |||||| |||||||||||    
T  7582299 aagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatcatatccacatggattgttgtttcgtccaa 7582375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 9737627 - 9737564
Alignment:
Q  72 ggtttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaa 135  Q
    |||||||||  || ||||||||||| ||||||||| |||||||||||||||  |||| ||||||    
T  9737627 ggtttgatggtcggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgatcagtaaa 9737564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 12318428 - 12318475
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||||    
T  12318428 attaggcaagtgtaccaaatcattaaccaagtaataaagtgataagta 12318475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 17709757 - 17709812
Alignment:
Q  91 gcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    |||||| ||||||||| |||||||||||||||  ||||||||| | ||||||||||    
T  17709757 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatcc 17709812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 22357639 - 22357590
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaa 135  Q
    |||||| |||| ||| |||||||||||||||||||||  |||||||||||    
T  22357639 attaggtaagtgtactaaatcatttaccaagtaataaagtgataagtaaa 22357590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 17951400 - 17951340
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    ||||| ||||| ||||||||| ||||||||||| |||  ||||||||||| ||| ||||||    
T  17951400 attagacaagtgtaccaaatcgtttaccaagtactaaagtgataagtaaagtatcgtatcc 17951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 17955252 - 17955192
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    ||||| ||||| ||||||||| ||||||||||| |||  ||||||||||| ||| ||||||    
T  17955252 attagacaagtgtaccaaatcgtttaccaagtactaaagtgataagtaaagtatcgtatcc 17955192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 19374909 - 19374834
Alignment:
Q  93 aagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||| ||||||||| |||| |||||||||| ||| |||||| | ||| |||||| | ||||||||||||| ||||||    
T  19374909 aagtgtaccaaatcgtttatcaagtaataaaatg-taagtagagtatcgtatccactgagattgtcgttttgtccaa 19374834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 20829842 - 20829806
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  20829842 attaggcaagtgtaccaaatcgtttaccaagtaataa 20829806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 31805015 - 31804920
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaac 170  Q
    ||||||||||||||||| |||| ||||||||  |||||||| ||||||  ||||||||| | |||||||||| ||||||||| |||||||||||||    
T  31805015 ttgatgtgcgaattaggaaagtgtaccaaattgtttaccaaataataaagtgataagtagagtattgtatccacagagattgccgtttcgtccaac 31804920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 15339223 - 15339316
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||  ||| ||||| | |||  ||||| ||  ||||||||||||||||||    
T  15339223 tgatgtgcggattaggcaagtgtaccaaatcatttaccaagtaataaagtgaaaagtagagtatcatatccacatggattgtcgtttcgtccaa 15339316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 29719344 - 29719256
Alignment:
Q  77 gatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||||    
T  29719344 gatgtgcggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagattatcgtatccacaaggattgtcgtttcgt 29719256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 25888336 - 25888247
Alignment:
Q  74 tttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||||||||| ||||||||||| ||||||||  |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||    
T  25888336 tttgatgtgcggattaggcaagtgtaccaaattgtttaccaagtaataaagtgataagtacagtatcgtatccacatggattgtcgtttc 25888247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 45553125 - 45553208
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||| ||||||||||  ||||||||||||||| ||||   ||| ||||||||||| ||||||    
T  45553125 attaggcaagtgtaccaaatcgtttatcaagtaataaagtgataagtaaaatatcgtatttacagggattgtcgttttgtccaa 45553208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 12953398 - 12953318
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| |||||||||||||| ||||||||||  | ||||||| | |||||| ||| ||  |||||||||||||||    
T  12953398 attaggcaagtgtaccaaatcatttatcaagtaataaagtaataagtagagtattgtgtccacatggattgtcgtttcgtc 12953318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 17743576 - 17743497
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  |||| |||||||||||||    
T  17743576 ggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattatcgtttcgtccaa 17743497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 20174739 - 20174656
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| |||| ||||||||| |||||||||||||||  ||||||||| | |||  | ||| ||  ||||||||||||||||||    
T  20174739 attaggaaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcatttccacatggattgtcgtttcgtccaa 20174656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 8503173 - 8503127
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||| ||||||||| |||||||||||||||  |||||||||    
T  8503173 ttaggcaagtgtaccaaatcgtttaccaagtaataacgtgataagta 8503127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 17349343 - 17349434
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||  ||||||||| | ||| ||||| |||||||||||||||  || |||||| | ||| |||||| || |||||||||||||||||||    
T  17349343 tgatgtgcagattaggcaa-tgtactaaatcgtttaccaagtaataaagtg-taagtagagtatcgtatccacaaagattgtcgtttcgtccaa 17349434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 25618540 - 25618631
Alignment:
Q  74 tttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||||  || |||||| || ||||||||||||  ||||||||| | |||  ||||| ||  |||||||||||||||    
T  25618540 tttgatgtgcggattaggcaagcgtatcaaatcgtt-accaagtaataaagtgataagtagagtatcatatccacatggattgtcgtttcgtc 25618631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 27909219 - 27909163
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    ||||||| ||||||||| |||||||||||||||  ||||||||| | ||| ||||||    
T  27909219 ggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 27909163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 32085458 - 32085538
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||| |||| ||||||||  |||||||||||||||  ||||||||| | |||  ||||| ||  |||||||||||||||    
T  32085458 attaggtaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtttcgtc 32085538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 23100067 - 23099973
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||||||||||| ||||||||| |||||||| ||||||  ||||||||| | ||| |||||| || |||||||||||||||||||    
T  23100067 ttgatgttcgaattaggcaagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccacatagattgtcgtttcgtccaa 23099973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 2350863 - 2350768
Alignment:
Q  74 tttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||  || |||||| | ||| |||||| ||  ||||||||||| ||||||    
T  2350863 tttgatgtgcggattaggcaagtgtaccaaatcatttaccaagtaataaactgctaagtagattatcgtatccacatggattgtcgttttgtccaa 2350768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 5530016 - 5530099
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||| || ||||||||  ||||||||||||||| ||||||||||||  || |||||| |||||||| |||||||||||||    
T  5530016 attaggcaggtgtaccaaattgtttaccaagtaataaaatgataagtaaagcatcgtatccacagagattttcgtttcgtccaa 5530099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 10587128 - 10587048
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||  ||| |||||||||||||||    
T  10587128 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatctacagggattgtcgtttcgtc 10587048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 11221268 - 11221189
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    |||| |||||| ||||||||| ||||| |||||||||  ||||||||| | |||||||||| ||| ||||||||||||||    
T  11221268 attaagcaagtgtaccaaatcgtttactaagtaataaattgataagtagagtattgtatccacagggattgtcgtttcgt 11221189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 16297924 - 16297841
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||| | ||| |||| | ||  ||||||| ||||||||||    
T  16297924 attaggcaagtgtaccaaataatttaccaagtaataatgtgataagtagattatcgtattcacatggattgtcatttcgtccaa 16297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 2563802 - 2563895
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| |||| |||||| ||||||||| |||||||||||||||  || |||||| | ||| |||||| ||  ||||||||||||||||||    
T  2563802 ttgatgtgcggattatgcaagtgtaccaaatcgtttaccaagtaataaagtg-taagtagagtatcgtatccacaaggattgtcgtttcgtccaa 2563895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 3329772 - 3329679
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| |||||| |||| || ||||| ||||||||||||||||  ||||||||| | ||| |||||| ||  |||||||||||| |||||    
T  3329772 tgatgtgcggattaggtaagtgtatcaaattatttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcatccaa 3329679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 7318268 - 7318348
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||| ||| |||||||||||||||  ||||||||| | ||| |||||| ||  |||||||||||||||    
T  7318268 attaggcaagtgtaccatatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcgtc 7318348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 8313483 - 8313419
Alignment:
Q  102 aaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||||||||||||||||||  ||||||||| | ||| |||||| ||| |||||||||||||||    
T  8313483 aaatcatttaccaagtaataaagtgataagtagattatcgtatccacagggattgtcgtttcgtc 8313419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 9500436 - 9500519
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||| | || | ||| |||||| ||  |||||| ||||||||    
T  9500436 cgaattaggcaagtgtacaaaatcatttaccaagtaataatgtgatcattagagtatcgtatccacaaggattgttgtttcgtc 9500519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 18369080 - 18369001
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||| ||||  |||||||||||||||  ||||||||| | ||||||||||  || ||||||||||||||||||    
T  18369080 ggcaagtgtactaaatagtttaccaagtaataaagtgataagtagagtattgtatccatagggattgtcgtttcgtccaa 18369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 22339421 - 22339332
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataata---tgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||| ||| | |||||||||||||| ||||||||| ||   ||||||||||| ||| | |||||||  ||||||||||||||||||    
T  22339421 cgaattagacaaatgtaccaaatcatttatcaagtaatattaaagtgataagtaaagtatcgcatccgcaaggattgtcgtttcgtccaa 22339332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 6042445 - 6042534
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    |||||||||| ||||| ||||| || |||||| ||||||| ||||||| ||| |||||| | ||| |||||| ||||| ||||||||||||    
T  6042445 ttgatgtgcggattagacaagtgtatcaaatcgtttaccatgtaataaaatg-taagtagagtatcgtatccacagaggttgtcgtttcgt 6042534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 9731742 - 9731648
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| ||||||||||| ||||||||| ||||  ||||| |||  ||||||||| | ||| ||| || ||  ||||||||||||||||||    
T  9731742 ttgatgtgcggattaggcaagtgtaccaaatcgtttaaaaagtagtaaagtgataagtagagtatcgtaaccacaaggattgtcgtttcgtccaa 9731648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 5108551 - 5108643
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| | ||| ||||||| |||||||| ||||||||||||||||  || |||||| | ||| |||||| ||  ||||||||||||||||||    
T  5108551 tgatgtgtggatttggcaagtgtaccaaattatttaccaagtaataaagtg-taagtagagtatcgtatccacaaggattgtcgtttcgtccaa 5108643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 8979103 - 8979027
Alignment:
Q  93 aagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||| |||||||||||||||||||||||||  ||||||||| | |||  ||||| ||  |||||| |||||||||||    
T  8979103 aagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatcatatccacatggattgttgtttcgtccaa 8979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 9574402 - 9574482
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||| ||||| ||||||||| |||||  ||||||||| | ||| |||||  |||||||||| ||||||||    
T  9574402 attaggcaagtgtactaaatcgtttaccaaggaataaagtgataagtagagtatcgtatctacagagattgttgtttcgtc 9574482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 9864430 - 9864350
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||  |||||||||||||||  ||||||||| | |||  ||||| ||  |||||||||||||||    
T  9864430 attaggcaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcatatccacaaggattgtcgtttcgtc 9864350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 10937598 - 10937674
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||    
T  10937598 ttaggcaagtgtatcaaatcgtttaccaagtaataaagtgataagtatagtatcgtatccacatggattgtcgtttc 10937674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 5047489 - 5047454
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    |||||||||| |||||||||||||||||||||||||    
T  5047489 ttaggcaagtgtaccaaatcatttaccaagtaataa 5047454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 8054589 - 8054510
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||||||||| |||||||| ||||||  ||||||||| | ||| |||| | |||  |||||||||||||||||    
T  8054589 ggcaagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtattcacaggaattgtcgtttcgtccaa 8054510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 15869590 - 15869653
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgca 149  Q
    ||||||||||| || |||||| |||||||||||||||  ||||||||| | ||| |||||||||    
T  15869590 attaggcaagtgtatcaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccgca 15869653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 4785822 - 4785914
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||  |||||||||| || |||||| || ||||||||||||  ||||||||| | |||   |||| ||| ||||||||||||||||||    
T  4785822 tgatgtgcggtttaggcaagtgtatcaaatcgtt-accaagtaataaagtgataagtagagtatcacatccacagggattgtcgtttcgtccaa 4785914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 4818822 - 4818914
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||  |||||||||| || |||||| || ||||||||||||  ||||||||| | |||   |||| ||| ||||||||||||||||||    
T  4818822 tgatgtgcggtttaggcaagtgtatcaaatcgtt-accaagtaataaagtgataagtagagtatcacatccacagggattgtcgtttcgtccaa 4818914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 10584590 - 10584513
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||| ||||| ||||||||| |||| ||||||||||  ||||||| ||| ||| |||||| ||  ||||||||||||    
T  10584590 attagacaagtgtaccaaatcgtttatcaagtaataaagtgataagcaaagtatcgtatccacatggattgtcgtttc 10584513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 1584540 - 1584618
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| |||||| ||||||||||||||||||  ||||||||  | ||| |||||| ||| |||||| ||||||||    
T  1584540 attaggcaagtgtaccaa-tcatttaccaagtaataaagtgataagt-gagtatcgtatccacagggattgttgtttcgtc 1584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 1814110 - 1814146
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  1814110 attaggcaagtgtaccaaattatttaccaagtaataa 1814146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 9916562 - 9916638
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||||||||| ||||||||||||||||| |||||||  | ||||||| | ||| |||||| ||  |||||| |||||    
T  9916562 ttaggcaagtataccaaatcatttaccacgtaataaagtaataagtagagtatcgtatccacatggattgtagtttc 9916638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 9924474 - 9924550
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||||||||| ||||||||||||||||| |||||||  | ||||||| | ||| |||||| ||  |||||| |||||    
T  9924474 ttaggcaagtataccaaatcatttaccacgtaataaagtaataagtagagtatcgtatccacatggattgtagtttc 9924550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 13759957 - 13759881
Alignment:
Q  93 aagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||| ||||||||| |||||||| ||||||  ||||||||| | |||  ||||| ||  ||||||||||||||||||    
T  13759957 aagtgtaccaaatcgtttaccaattaataaagtgataagtagagtatcatatccacaaggattgtcgtttcgtccaa 13759881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 18449238 - 18449314
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||||||||| || |||||  |||||||||||||||  ||| ||||| ||||| ||||||  || ||||||||||||    
T  18449238 ttaggcaagtgtatcaaattgtttaccaagtaataaagtgagaagtataatatcgtatccatagggattgtcgtttc 18449314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 18467474 - 18467526
Alignment:
Q  114 aagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||||||  ||||||||||| |||||||||| ||  |||||||||||||||    
T  18467474 aagtaataaagtgataagtaaagtattgtatccacatggattgtcgtttcgtc 18467526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 19153293 - 19153329
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  19153293 attaggcaagtgtaccaaatcttttaccaagtaataa 19153329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 20752692 - 20752728
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  20752692 attaggcaagtgtaccaaatcttttaccaagtaataa 20752728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 21230307 - 21230387
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| || |||||| |||||||| |||||| |||||||||| | ||| |||| |  || |||| ||||||||||    
T  21230307 attaggcaagtatatcaaatcgtttaccaaataataaaatgataagtagagtatcgtattcatagggattatcgtttcgtc 21230387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 31492928 - 31493008
Alignment:
Q  89 aggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||| || |||||| ||||||| |||||||  ||||||||| | ||| |||||| ||  ||||||||||| ||||||    
T  31492928 aggcaagtgtatcaaatcgtttaccaggtaataaagtgataagtagagtatcgtatccacatggattgtcgttttgtccaa 31493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 23143707 - 23143800
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||  ||||||||| | |||  ||||| ||| ||||||||||||||||||    
T  23143707 tgatgtgcggattaggcaagtgtaccaaatcatttaccaattaataaagtgataagtagagtatcatatccacagggattgtcgtttcgtccaa 23143800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 21907427 - 21907510
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||||| ||| |||||| ||  ||||||||||||||||||    
T  21907427 attaggcaagtataccaaatcgtttaccaagtaataaagtgataagtaaagtatcgtatccacaaggattgtcgtttcgtccaa 21907510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 17729140 - 17729230
Alignment:
Q  79 tgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| |||||| |||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| || |||||||||||||||||||    
T  17729140 tgtgcggattaggtaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaaagattgtcgtttcgtccaa 17729230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 9726017 - 9726100
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||||||||    
T  9726017 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcgtccaa 9726100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 12183446 - 12183354
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtcc 167  Q
    |||||||||| |||| |||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||| ||||||||    
T  12183446 ttgatgtgcggattatgcaagtgtaccaaatcgtttaccaagtaataaagtgataagtacagtatcgtatccacatggattgtcatttcgtcc 12183354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 14079558 - 14079501
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||  |||||||||    
T  14079558 tgatgtgcgaattaggcaagtgtaccaaatcgtttaccaagttataaagtgataagta 14079501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 21672549 - 21672456
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| |||||||||||  |||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  |||| || ||||||||||    
T  21672549 tgatgtgcggattaggcaagtgcaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattatcttttcgtccaa 21672456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 19244580 - 19244663
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||||||| | ||| |||||||||||||||  ||||||||| | ||| | |||   |||||||||||||||||||||    
T  19244580 attaggcaagtttactagatcgtttaccaagtaataaagtgataagtagagtatcgaatctatagagattgtcgtttcgtccaa 19244663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 22567835 - 22567918
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||  |||||||||||||||  ||| ||||| | |||||||||| ||  |||||| |||||||||||    
T  22567835 attaggcaagtgtaccaaattgtttaccaagtaataacgtgaaaagtatagtattgtatccacatggattgtggtttcgtccaa 22567918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 23645859 - 23645788
Alignment:
Q  98 taccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| |||||||||||||||  ||||||||| | ||| ||||||  || ||||||||||||||||||    
T  23645859 taccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccatagggattgtcgtttcgtccaa 23645788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 25927407 - 25927324
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||| | |||||||||||||||  ||||||||| ||||| |||||| ||  |||| | |||||||||||    
T  25927407 attaggcaagtgtaccaaaacgtttaccaagtaataaagtgataagtagaatatcgtatccacatggattttagtttcgtccaa 25927324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 5624624 - 5624682
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||| ||||||||| | ||||||||| |||||||||||||||  |||||||||    
T  5624624 ttgatgtgcgtattaggcaaatgtaccaaatcgtttaccaagtaataaagtgataagta 5624682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 9516786 - 9516863
Alignment:
Q  92 caagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||||||| |||||| ||||||||  ||||||||| | ||| |||||| ||  ||||||||||||||||||    
T  9516786 caagtgtaccaaatcgtttacctagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcgtccaa 9516863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 21679965 - 21679872
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| |||||||||||  |||||||| ||||| |||||||||  ||||||||| | ||| |||||| ||  |||| || ||||||||||    
T  21679965 tgatgtgcggattaggcaagtgcaccaaatcgtttactaagtaataaagtgataagtagagtatcgtatccacatggattatcttttcgtccaa 21679872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 23844562 - 23844486
Alignment:
Q  93 aagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||| ||||||||| ||||||||||||||| |||||||||| | |||  ||||   || ||||||||||||||||||    
T  23844562 aagtgtaccaaatcgtttaccaagtaataaaatgataagtagagtatcatatctaaagggattgtcgtttcgtccaa 23844486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 22410409 - 22410354
Alignment:
Q  108 tttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||||||||||||| |||||||||| | ||| |||||| ||| ||||||||||||    
T  22410409 tttaccaagtaataaaatgataagtagagtatcgtatccacagggattgtcgtttc 22410354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 20002489 - 20002440
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagt 132  Q
    |||| ||||||||| |||||||||| ||||||||||||||  ||||||||    
T  20002489 cgaaataggcaagtgtaccaaatcaattaccaagtaataaagtgataagt 20002440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 4339730 - 4339814
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaac 170  Q
    ||||| ||||| ||||||||  |||| ||| ||||||  ||||||||| | |||||||||| ||  ||||||||||| |||||||    
T  4339730 attagacaagtgtaccaaattgtttatcaaataataaagtgataagtagagtattgtatccacaatgattgtcgttttgtccaac 4339814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 15466365 - 15466401
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  15466365 attaggcaagtgtaccaaatcgtttaccaagtaataa 15466401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 21301902 - 21301996
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||| ||||||||||    
T  21301902 ttgatgtgcggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcatttcgtccaa 21301996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 10744896 - 10744977
Alignment:
Q  85 aattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||| | ||| || |||  || |||||||||||||||    
T  10744896 aattaggcaagtttaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtttccatagggattgtcgtttcgtc 10744977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 41508352 - 41508445
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| ||||||||||| ||||||||| |||| ||||||||||  ||||| ||| ||||| ||||| || | ||||||||||| ||||||    
T  41508352 tgatgtgcggattaggcaagtgtaccaaatcgtttatcaagtaataaagtgataggtagaatatcgtatctgcggggattgtcgtttagtccaa 41508445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 12805994 - 12805911
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||| | |||  ||||| ||  |||||||||||| |||||    
T  12805994 attaggcaagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtttcatccaa 12805911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 21325335 - 21325418
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||  |||||||||||||||  ||||||||| | ||| |||||| || | |||||||||||||||||    
T  21325335 attaggcaagtgtaccaaattgtttaccaagtaataaactgataagtatagtatcgtatccacaaaaattgtcgtttcgtccaa 21325418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 3116525 - 3116440
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||||||||| ||||||||  |||||||||||||||  ||||||||  | ||| |||||| ||| ||||||||||||||||||    
T  3116525 cgaattaggcaagtgtaccaaattgtttaccaagtaataaagtgataagt-gagtatagtatccacagggattgtcgtttcgtccaa 3116440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 5508319 - 5508413
Alignment:
Q  74 tttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||  |||||||||||||| ||||||||||||| |||||||||||  ||||||||  | |||  ||||| ||  ||||||||||||||||||    
T  5508319 tttgatggtcgaattaggcaagtgtaccaaatcatttgccaagtaataaagtgataagt-gagtataatatccacatggattgtcgtttcgtccaa 5508413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 22349410 - 22349487
Alignment:
Q  92 caagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||||||| |||||||| ||||||  ||||||||| | ||| |||||| || | |||||||||||||||||    
T  22349410 caagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccacataaattgtcgtttcgtccaa 22349487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 10917913 - 10917993
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||| |||||||| ||||||  ||||||||| | ||| |||||| ||  |||||| ||||||||    
T  10917913 attaggcaagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccacatggattgttgtttcgtc 10917993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 12411149 - 12411225
Alignment:
Q  89 aggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    |||||||| |||||||||| ||||||||||||||  |||| |||| | ||| |||||| ||  ||||||||||||||    
T  12411149 aggcaagtgtaccaaatcacttaccaagtaataaagtgattagtagagtatcgtatccacaaggattgtcgtttcgt 12411225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 4650231 - 4650309
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||| ||||||||||||||||||  |||| |||||| ||| |||||| ||| ||||||| ||||| ||||    
T  4650231 ggcaagtgtaccaa-tcatttaccaagtaataaagtgatgagtaaagtatcgtatccacagggattgtcctttcgcccaa 4650309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 8319035 - 8319113
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    ||||||||||| |||||| || ||||||||||||| |  ||||||||| ||||| |||||| ||| |||| |||||||||    
T  8319035 attaggcaagtataccaa-tcgtttaccaagtaatgaagtgataagtagaatatagtatccacagggattatcgtttcgt 8319113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 31286118 - 31286037
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||| |||||||||||||||||||||||||  || ||| || ||||| |||||| ||| |||||| |||||||||||    
T  31286118 attagacaagtgtaccaaatcatttaccaagtaataaagtg-taactagaatatcgtatccacagggattgt-gtttcgtccaa 31286037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 16245844 - 16245786
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||| ||||| ||||| |||||| || |||||||||||||||  |||||||||    
T  16245844 ttgatgtgcggattagacaagtgtaccaactcgtttaccaagtaataaagtgataagta 16245786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 19908307 - 19908385
Alignment:
Q  91 gcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||| ||||||||| |||||||| |||||| |||||||||| | ||| |||||| ||  | | ||||||||||||||    
T  19908307 gcaagtgtaccaaatcgtttaccaaataataaaatgataagtatagtatcgtatccacaagggtcgtcgtttcgtccaa 19908385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 2167730 - 2167638
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||  ||||| ||||| ||||||||| || ||||||||||||  ||||||||| | ||| |||||| || | | |||||||||||||||    
T  2167730 tgatgtgcagattagacaagtgtaccaaatcgtt-accaagtaataaagtgataagtagagtatcgtatccacataaaatgtcgtttcgtccaa 2167638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 28728940 - 28729016
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||||||||| |  ||||| ||||| ||||||||||  ||||||||| | ||| |||||| || |||||||||||||    
T  28728940 ttaggcaagtgtgtcaaataatttatcaagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttc 28729016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 723 - 806
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | |||||||||  ||  ||||||||||||||||||    
T  723 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatcaacaaggattgtcgtttcgtccaa 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 14779564 - 14779643
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||||||||||||||||||||||| |||||| || | |||  ||||| ||| ||||||||||||||||||    
T  14779564 ggcaagtgtaccaaatcatttaccaagtaataatgtgataattagagtatcatatccacagggattgtcgtttcgtccaa 14779643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 17359147 - 17359240
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||  ||||||||  | |||  |||||  | |||||||||||||||||||    
T  17359147 tgatgtgcggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagttgagtatcatatccataaagattgtcgtttcgtccaa 17359240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 21449074 - 21449167
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||| || |||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||  ||||||||||||| ||||    
T  21449074 tgatgtgcggatcaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtttcggccaa 21449167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 15544066 - 15543987
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| | || |||||||||||||||||    
T  15544066 ggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacggaaattgtcgtttcgtccaa 15543987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 25405730 - 25405651
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||| || |||||||||||||||  ||||||||||| ||| |||||| ||  ||||||||||||||||||    
T  25405730 ggcaagtgtaccaagtcgtttaccaagtaataaagtgataagtaaagtatcgtatccacaaggattgtcgtttcgtccaa 25405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 27117822 - 27117764
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtat 144  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||| | ||||||||    
T  27117822 attaggcaagtttaccaaatcgtttaccaagtaataaagtgataagtagagtattgtat 27117764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 9787983 - 9787903
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| |||||||||||||| ||||||||||  ||||||||| | ||| ||||||  | | ||||||||||||||    
T  9787983 attaggcaagtgtaccaaatcatttagcaagtaataaagtgataagtagagtatcgtatccatataaattgtcgtttcgtc 9787903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 12208600 - 12208679
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||| ||||| |||||||||||||||  ||||||||| |||||  ||||| ||  ||||||||||||||||||    
T  12208600 ggcaagtgtactaaatcgtttaccaagtaataaagtgataagtagaatatcatatccacatggattgtcgtttcgtccaa 12208679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 21847629 - 21847711
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||||||||| ||||||||||||||| |   |||||| | |||||||||| ||  ||||||||||||||||||    
T  21847629 attaggcaagtgtaccaaatcgtttaccaagtaataa-agtctaagtagagtattgtatccacatggattgtcgtttcgtccaa 21847711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 26649074 - 26648992
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||| || |||||| ||||||||||||||| |||||||||  |||||||||||| ||  |||| |||||||||||||    
T  26649074 attagacaagtgtatcaaatcgtttaccaagtaataaaatgataagt-gaatattgtatccacatggattatcgtttcgtccaa 26648992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 17610354 - 17610277
Alignment:
Q  92 caagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||||||||| |||||||||||||||  | ||||||| | ||| |||||| ||  ||||||||||||||||||    
T  17610354 caagtgtaccaaatcgtttaccaagtaataaagttataagtagagtatcgtatccacatggattgtcgtttcgtccaa 17610277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 16359866 - 16359925
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatcc 146  Q
    ||||||||||| ||||||||| ||||||||||||||| ||| |||||| | ||||||||||    
T  16359866 attaggcaagtgtaccaaatcgtttaccaagtaataaaatg-taagtatagtattgtatcc 16359925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 23038115 - 23038036
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||  | ||| |||||| ||  |||||||||||||||    
T  23038115 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagt-gagtatcgtatccacatggattgtcgtttcgtc 23038036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 3591757 - 3591674
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| ||| ||||| |||| ||||||||||  |||||| || | ||| |||||| || |||||||||||| ||||||    
T  3591757 attaggcaagtgtacaaaatcgtttatcaagtaataaagtgataaatagagtatcgtatccacatagattgtcgttttgtccaa 3591674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 18736340 - 18736265
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgt 165  Q
    ||||||| ||||||||| |||| ||||||||||  |||||||||   ||| |||||| ||| ||||||||||||||    
T  18736340 ggcaagtgtaccaaatcgtttaacaagtaataaagtgataagtagtgtatcgtatccacagggattgtcgtttcgt 18736265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 22664198 - 22664248
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||||| | ||||||||| |||||||||||||||  |||||||||    
T  22664198 cgaattaggcaaatgtaccaaatcgtttaccaagtaataaagtgataagta 22664248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 13345450 - 13345357
Alignment:
Q  76 tgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| | ||| ||||||| ||||||||  |||||||||||||||  ||||||||| | |||  ||||| ||  ||||||||||| ||||||    
T  13345450 tgatgtgtggattgggcaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgttttgtccaa 13345357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 32383103 - 32383066
Alignment:
Q  85 aattaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  32383103 aattaggcaagtgtaccaaatcgtttaccaagtaataa 32383066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 24267886 - 24267806
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||| ||||| || ||||||||||| |||||||||| |||||||||| | |||  |||||  | ||||||| ||||||||    
T  24267886 attagacaagtgtatcaaatcatttatcaagtaataaaatgataagtatagtatcatatccatatagattgttgtttcgtc 24267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 24281271 - 24281319
Alignment:
Q  85 aattaggcaagtttaccaaatcatttaccaagtaataatatgataagta 133  Q
    |||||||||| | ||||||||| |||||||||||||||  |||||||||    
T  24281271 aattaggcaaatgtaccaaatcgtttaccaagtaataaagtgataagta 24281319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 69911 - 69991
Alignment:
Q  89 aggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||| |||||||||||||||||||||||||  ||| ||||||| ||| |||| | ||  ||||||||||||||||||    
T  69911 aggcaagtgtaccaaatcatttaccaagtaataaagtgacaagtaaagtatcgtatacacaaggattgtcgtttcgtccaa 69991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 54855 - 54931
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgttt 162  Q
    |||||| |||| ||||||||| |||||||||||||||  ||||||||| | |||||||||| ||| |||||||||||    
T  54855 attaggaaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatccacagggattgtcgttt 54931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 25402452 - 25402360
Alignment:
Q  75 ttgatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtcc 167  Q
    ||||||||| |||||||||||| ||||||||  ||| ||||||||  |  ||||||||| | |||||||||| ||| ||||||||||||||||    
T  25402452 ttgatgtgcaaattaggcaagtgtaccaaattgtttgccaagtaaggaagtgataagtagagtattgtatccacagggattgtcgtttcgtcc 25402360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 15375982 - 15375903
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| ||||||||| |||||||| |||||| |||||||||| | |||  ||||| ||| ||||||||||||||||||    
T  15375982 ggcaagtgtaccaaatcgtttaccaaataataaaatgataagtagagtatcctatccacagggattgtcgtttcgtccaa 15375903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 25550617 - 25550525
Alignment:
Q  77 gatgtgcgaattaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    |||||||  ||||||||||| || |||||| |||||||||||||||  ||||||||| | |||  ||||| ||| ||||||| ||||||||||    
T  25550617 gatgtgcagattaggcaagtgtatcaaatcgtttaccaagtaataaagtgataagtagagtatcatatccacagggattgtcatttcgtccaa 25550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 24852276 - 24852196
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||| ||| |||||  |||||||||||||| |||||||||| | ||| |||||| ||  |||||| ||||||||    
T  24852276 attaggcaagtctactaaatcgattaccaagtaataaaatgataagtatagtatcgtatccacatggattgttgtttcgtc 24852196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 24140442 - 24140520
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||| |||||| || |||||||||||||||  ||||||||| | |||||||||| | | ||||||| ||||||||||    
T  24140442 ggcaagtgtaccaa-tcgtttaccaagtaataaagtgataagtagagtattgtatccactgggattgtcctttcgtccaa 24140520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 24267061 - 24267022
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  24267061 cgaattaggcaagtgtaccaaatcgtttaccaagtaataa 24267022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 24343692 - 24343653
Alignment:
Q  83 cgaattaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  24343692 cgaattaggcaagtgtaccaaatcgtttaccaagtaataa 24343653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 15690773 - 15690856
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgc-agagattgtcgtttcgtccaac 170  Q
    |||||| |||||||||||||| |||||||| ||||||  ||||||||| | ||| |||||| | ||| ||||||||||||||||||    
T  15690773 attaggtaagtttaccaaatcgtttaccaa-taataaagtgataagtagagtatcgtatccacgaga-attgtcgtttcgtccaac 15690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 17431884 - 17431961
Alignment:
Q  92 caagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||| ||| ||||| |||||||||||||||  ||  ||||| | ||| |||||| |||||||||||||||| |||||    
T  17431884 caagtgtactaaatcgtttaccaagtaataaagtggaaagtagagtatcgtatccacagagattgtcgtttcatccaa 17431961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 23380360 - 23380303
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtat 144  Q
    |||||||||| ||||||||  |||||||||||||||  ||||||||||| ||| ||||    
T  23380360 ttaggcaagtgtaccaaattgtttaccaagtaataaactgataagtaaactatcgtat 23380303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 15469931 - 15469967
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  15469931 attaggcaagtgtaccaaatcgtttaccaagtaataa 15469967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 17171657 - 17171577
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    |||||| |||| ||||||||| |||| ||||||||||  ||||||||| |  || |||||| ||  |||||||||||||||    
T  17171657 attaggtaagtgtaccaaatcttttatcaagtaataaagtgataagtagagcatcgtatccacatggattgtcgtttcgtc 17171577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 17185459 - 17185535
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    |||| ||||| ||| |||||||||||||| ||||||  ||||||||| | ||| |||||  ||| ||||||||||||    
T  17185459 ttagacaagtgtactaaatcatttaccaaataataaagtgataagtagagtatcgtatctacagggattgtcgtttc 17185535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 20744911 - 20744879
Alignment:
Q  90 ggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||| |||||||||||||||||||||||||    
T  20744911 ggcaagtgtaccaaatcatttaccaagtaataa 20744879  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 168402 - 168326
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttc 163  Q
    ||||||||||| ||||||||| |||||||||||||||  ||||||||| | ||| |||||| ||| ||||||||||||    
T  168402 attaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacag-gattgtcgtttc 168326  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 6282 - 6365
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||| || |||||| ||||| |||||||||  | ||||||||| ||| |||||| ||  |||||| |||||||||||    
T  6282 attaggcaagtgtatcaaatcgtttacgaagtaataaagtcataagtaaagtatcgtatccacatggattgttgtttcgtccaa 6365  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 12105 - 12162
Alignment:
Q  87 ttaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtat 144  Q
    |||||||||| ||||||||  |||||||||||||||  ||||||||||| ||| ||||    
T  12105 ttaggcaagtgtaccaaattgtttaccaagtaataaactgataagtaaactatcgtat 12162  T

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Target: scaffold0638 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 904 - 844
Alignment:
Q  109 ttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtccaa 169  Q
    ||||||||||||||  ||||||||| | ||| ||||||   ||||||||||||||||||||    
T  904 ttaccaagtaataaagtgataagtagagtatcgtatccattgagattgtcgtttcgtccaa 844  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 15569 - 15533
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataa 122  Q
    ||||||||||| || ||||||||||||||||||||||    
T  15569 attaggcaagtgtatcaaatcatttaccaagtaataa 15533  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 81482 - 81561
Alignment:
Q  86 attaggcaagtttaccaaatcatttaccaagtaataatatgataagtaaaatattgtatccgcagagattgtcgtttcgtc 166  Q
    ||||||||||||||| ||||| |||||||| ||||||  |||||||| |  |||||||||| ||  |||||| ||||||||    
T  81482 attaggcaagtttacgaaatcgtttaccaaataataaagtgataagt-aggtattgtatccacatggattgtggtttcgtc 81561  T

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