View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_26 (Length: 446)
Name: NF19103_high_26
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 49817737 - 49817964
Alignment:
| Q |
16 |
atgaactacttgattaatggctaaattcaatatttttcccctaaataatttatgagtttcatattactcctctaattaataaacattttgtttttgtcct |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49817737 |
atgaactacttgattaatagctaaattcaatattttttccctaaataatttatgagtttcatattagtcctctaattaataaacattttgtttttgtcct |
49817836 |
T |
|
| Q |
116 |
ttaaatatattttcattagtcaatttggtcttaagccgttaattttaacttaatacctataaggtggatcaacatcgattttcagatcatgcaagaccat |
215 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
49817837 |
ttaaatatattttcattactcaatttgttctcaagccgttaattttaacttaatacctataaggtggaccaacatcgattttcagatcatgcaaaaccat |
49817936 |
T |
|
| Q |
216 |
gaatctaatcatgaaccattaacatata |
243 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
49817937 |
gaatctaatcatgaaccatcaacatata |
49817964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 49818017 - 49818052
Alignment:
| Q |
296 |
cttgaaggttgatgaatatggtatgaagttcatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
49818017 |
cttgaaggttgatgaatatggtatgaagttcatatt |
49818052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 49818113 - 49818145
Alignment:
| Q |
395 |
tatgtgttaataattcacattcaatagtcttgc |
427 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
49818113 |
tatgtgttaatagttcacattcaatagtcttgc |
49818145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 30826663 - 30826748
Alignment:
| Q |
55 |
cctaaataatttatgagtttcatattactcctctaattaataaacattttgtttttgtcctttaaatatattttcattagtcaattt |
141 |
Q |
| |
|
||||||||||||||||||||||| | | || ||||||||||| || | ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
30826663 |
cctaaataatttatgagtttcatttgagtctcttaattaataaaagttatatttttgtcctttaaatata-tatcattagtcaattt |
30826748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University