View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_27 (Length: 444)

Name: NF19103_high_27
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_27
NF19103_high_27
[»] chr4 (7 HSPs)
chr4 (25-431)||(6453193-6453599)
chr4 (25-433)||(37112862-37113275)
chr4 (25-433)||(22197311-22197723)
chr4 (32-433)||(34014864-34015269)
chr4 (25-327)||(8683953-8684250)
chr4 (55-89)||(5321315-5321349)
chr4 (53-85)||(10153416-10153448)
[»] chr7 (8 HSPs)
chr7 (25-433)||(44521474-44521887)
chr7 (25-418)||(7282532-7282930)
chr7 (185-433)||(44233481-44233729)
chr7 (25-121)||(44233743-44233839)
chr7 (297-430)||(31430013-31430146)
chr7 (53-85)||(10427837-10427869)
chr7 (54-85)||(9604267-9604298)
chr7 (54-85)||(9831838-9831869)
[»] chr3 (4 HSPs)
chr3 (25-433)||(13014060-13014472)
chr3 (25-107)||(38472759-38472841)
chr3 (50-273)||(55339428-55339655)
chr3 (54-85)||(30187269-30187300)
[»] chr6 (4 HSPs)
chr6 (25-433)||(12335828-12336240)
chr6 (309-410)||(22022151-22022256)
chr6 (311-345)||(17529304-17529338)
chr6 (53-85)||(34316090-34316122)
[»] chr2 (10 HSPs)
chr2 (32-430)||(25599203-25599606)
chr2 (25-432)||(36964466-36964876)
chr2 (25-256)||(16238689-16238925)
chr2 (25-135)||(22670007-22670117)
chr2 (25-118)||(45066020-45066113)
chr2 (309-410)||(44332259-44332364)
chr2 (50-107)||(959851-959907)
chr2 (54-85)||(26311158-26311189)
chr2 (54-84)||(33033647-33033677)
chr2 (53-81)||(12111202-12111230)
[»] scaffold0385 (1 HSPs)
scaffold0385 (25-433)||(2775-3185)
[»] chr8 (5 HSPs)
chr8 (25-377)||(27420339-27420695)
chr8 (371-433)||(27420705-27420767)
chr8 (56-85)||(42747278-42747307)
chr8 (53-85)||(11961682-11961714)
chr8 (53-85)||(14919118-14919150)
[»] chr5 (3 HSPs)
chr5 (25-308)||(9064537-9064824)
chr5 (55-89)||(20428440-20428474)
chr5 (55-85)||(22099139-22099169)
[»] scaffold0019 (1 HSPs)
scaffold0019 (25-227)||(38478-38685)
[»] chr1 (5 HSPs)
chr1 (183-432)||(48477131-48477380)
chr1 (25-82)||(16236992-16237049)
chr1 (53-85)||(33799147-33799179)
chr1 (55-85)||(27895506-27895536)
chr1 (53-85)||(17541509-17541541)
[»] scaffold0343 (1 HSPs)
scaffold0343 (155-226)||(14046-14117)
[»] scaffold1951 (1 HSPs)
scaffold1951 (54-85)||(480-511)
[»] scaffold0015 (1 HSPs)
scaffold0015 (57-85)||(4855-4883)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 25 - 431
Target Start/End: Complemental strand, 6453599 - 6453193
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6453599 aacaagtcaaaatggattttataattagaagtgattcatctcgcacaaggtgtgcaaaagagaataacttgaaaactatacaattgtcagttcaccggtg 6453500  T
Q  125 ccatgaatacaaacaccgtaaattcaaaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6453499 ccatgaatacaaacaccgtaaattcaaaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggca 6453400  T
Q  225 aaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtgattat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6453399 aaagaatgcaacctagctttaagccactggaaagagagtaatttcactcagtcagatagaatgccaatggatgtagccttctgagtaaaaatgtgattat 6453300  T
Q  325 tcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactggaaata 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  6453299 tcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatcccgccatatgtccgaactagaaata 6453200  T
Q  425 atggtct 431  Q
    |||||||    
T  6453199 atggtct 6453193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 433
Target Start/End: Complemental strand, 37113275 - 37112862
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||  |||||||||| ||||    
T  37113275 aacaagtcaaaatggatttcataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaggtcagttcactggtg 37113176  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||| |||   ||||     ||| ||||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||    
T  37113175 ccataaatacagacatcgtgctttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaactga 37113076  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||    
T  37113075 aggcaaaagaatgcaacctagctttaagccactggaatgagagtaatttcactctgtcagatagaatgctaattgatgtagacttctgattaaaaatgtg 37112976  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
    ||| ||||||||||||||  | ||||  ||| | || |||||||||||||| ||||||||||||||||| || ||||| | |||||||||||| |||||     
T  37112975 attgttcctctccttccatgtagtccatacataagcgagccaaattaactgcaaaaaagaatgtgaaaaatggggtaaacccgccatatgtccaaactga 37112876  T
Q  420 aaataatggtctct 433  Q
    | ||||||||||||    
T  37112875 agataatggtctct 37112862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 433
Target Start/End: Complemental strand, 22197723 - 22197311
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||  |||||||||| ||||    
T  22197723 aacaagccaaaaagaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 22197624  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||||| ||  ||||     ||| ||||||| ||||||| ||| || |||||||||||||||| |||||||||| ||||||||||||||    
T  22197623 ccataaatacagacaccatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagg-tgttgccaccagtcatggtaactga 22197525  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| | |    
T  22197524 aggcaaaagaatgcaacctagctttaagccactggaatgagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaaagcg 22197425  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
    ||| ||||||||||||||  | ||||  ||||| || |||||||||||||||||||||||||||||||| || |||||   |||||||||||| |||||     
T  22197424 attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatggggtaaatccgccatatgtccaaactga 22197325  T
Q  420 aaataatggtctct 433  Q
    | | ||||||||||    
T  22197324 agacaatggtctct 22197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 32 - 433
Target Start/End: Complemental strand, 34015269 - 34014864
Alignment:
Q  32 caaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtgccatgaa 131  Q
    ||||||||| || |||| || ||||||||||||||||| ||| ||||||||||| ||| |||| |||||||||||||  || ||||| ||||||||  |     
T  34015269 caaaatggaattaataaccataagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaata-tcggttcatcggtgccacaat 34015171  T
Q  132 tacaaacaccgtaaattcaaaagcaaa-----gaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggcaaa 226  Q
     ||| ||||||| | ||| ||| ||||     ||| |||||||  || ||  ||||||  || || |||||||||||| ||||||||||||||| |||||    
T  34015170 aacagacaccgtgatttctaaaccaaaacaaagaagattacatgtaaatactcatacagtacctacggtgttgccaccagtcatggtaactgaaagcaaa 34015071  T
Q  227 agaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtgattattc 326  Q
     ||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||  |||| ||| |||| |||||||||| |||||||||| || | |    
T  34015070 cgaatgcaacctagttttaagccactggaatgagagtaatttcactttgtcagatatcatgctaattgatgcagccttctgattaaaaatgtggttgtcc 34014971  T
Q  327 ctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactggaaataat 426  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||| | |||||||| ||| ||||| | |||||    
T  34014970 ctctccttccaaatggtccacacacaagccaggcaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatttccaaactgaagataat 34014871  T
Q  427 ggtctct 433  Q
    |||||||    
T  34014870 ggtctct 34014864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 8683953 - 8684250
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| |||||||||    
T  8683953 aacaaatcaaaatagattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaaggatataattgtcagctcaccggtg 8684052  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    ||||||||||| ||||||| | ||||     ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||  ||||             
T  8684053 ccatgaatacagacaccgtgatttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacatagggtgttgccaccaatcat--------- 8684143  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
     ||||||||||||||||||| |||||| ||||| ||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |    
T  8684144 -ggcaaaagaatgcaacctacctttaaaccactagaatgagagtaatttcactatgtcagatagaataccaatggatgtagccttctgagtaaaaatgcg 8684242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 5321349 - 5321315
Alignment:
Q  55 gtgattcatctcgcacaaggtgtgcaaaagataat 89  Q
    |||||||||| ||||||||||||||||||||||||    
T  5321349 gtgattcatcccgcacaaggtgtgcaaaagataat 5321315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10153448 - 10153416
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||| |||||||||||||||    
T  10153448 aagtgattcatctcgcataaggtgtgcaaaaga 10153416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 433
Target Start/End: Original strand, 44521474 - 44521887
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||  |||||||||| ||||    
T  44521474 aacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg 44521573  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||| | ||  ||||     ||| ||||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||    
T  44521574 ccataaatacagacatcatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaactga 44521673  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |    
T  44521674 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaatgcg 44521773  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
    ||| ||||||||||||||  | ||||  ||||| || |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||     
T  44521774 attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatggggtaaacccgccatatgtccaaactga 44521873  T
Q  420 aaataatggtctct 433  Q
    | ||||||||||||    
T  44521874 agataatggtctct 44521887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 418
Target Start/End: Original strand, 7282532 - 7282930
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||   ||||||||| ||||    
T  7282532 aacaagtcaaaatagatttcataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaacgatacaaaattcagttcactggtg 7282631  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||| |     ||||     ||| ||||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||| ||    
T  7282632 ccataaatacagacatcaagctttcacaatcaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaaccga 7282731  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  7282732 aggcaaaagaatgcaacctagctttaagccactagaatgagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaatgtg 7282831  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactg 418  Q
    ||| ||||||||||||||| ||||||  ||||| || |||||||||||||||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  7282832 attgttcctctccttccaagtggtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacctgccatatgtccaaactg 7282930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 185 - 433
Target Start/End: Complemental strand, 44233729 - 44233481
Alignment:
Q  185 agacatagggtgttgccaccggtcatggtaactgaaggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaataga 284  Q
    ||||||||||| |||||||| ||||||||||||||| |||||   |||||||||| |||||||||||| |||||| |||||||||||||||||| ||| |    
T  44233729 agacatagggtattgccaccagtcatggtaactgaaagcaaacatatgcaacctaactttaagccactagaaagaaagtaatttcactctgtcagatata 44233630  T
Q  285 atgccaatggatgtagccttctgagtaaaaatgtgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtg 384  Q
    | |   |  || |||||||||||| |||||||||| || ||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||    
T  44233629 acgtttactgaagtagccttctgattaaaaatgtggttgttcctctccttccaaattgtccacacacaagccagccaaattaattgtaaaaaagaatgtg 44233530  T
Q  385 aaaagtgcggtaatctcgccatatgtccgaactggaaataatggtctct 433  Q
    |||| |||||||| |  ||||||||||| ||||||| ||||||||||||    
T  44233529 aaaaatgcggtaaacctgccatatgtccaaactggagataatggtctct 44233481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 44233839 - 44233743
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccg 121  Q
    |||||| ||||||||  || |||| |||||||||||| |||| || ||||||||||||||||||| |||| |||   |||||| |||||||| ||||    
T  44233839 aacaagccaaaatgggattaataaccagaagtgattcgtctcacataaggtgtgcaaaagataatcacttcaaacaaatacaaatgtcagttgaccg 44233743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 430
Target Start/End: Complemental strand, 31430146 - 31430013
Alignment:
Q  297 gtagccttctgagtaaaaatgtgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggta 396  Q
    |||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||  ||||| || ||||| |||| |||||  ||  |||||||||| || ||||    
T  31430146 gtagccttgtgattaaaaatgtgattgttcatctccgtccaaatagtccaaacacaagctagccagattatctgtatgaataaatgtgaaaattgtggta 31430047  T
Q  397 atctcgccatatgtccgaactggaaataatggtc 430  Q
    | || |||| ||| || ||||| | |||||||||    
T  31430046 acctggccaaatgcccaaactgaatataatggtc 31430013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10427869 - 10427837
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||||||||||||||    
T  10427869 aagtgattcatctcgcacaaggtgtgcaaaaga 10427837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 9604267 - 9604298
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||||    
T  9604267 agtgattcatctcgcacaaggtgtgcaaaaga 9604298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 9831838 - 9831869
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||||    
T  9831838 agtgattcatctcgcacaaggtgtgcaaaaga 9831869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 25 - 433
Target Start/End: Original strand, 13014060 - 13014472
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||||||||||||  || |||| |||||||||||| ||||||||| ||||||||||||| ||| |||| |||  ||||||| ||||||||||||||||    
T  13014060 aacaagtcaaaatgggattaataaccagaagtgattcgtctcgcaca-ggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtg 13014158  T
Q  125 ccatgaatacaaacaccgtaaattcaaaagcaaag-----aatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| || ||| ||||||| | ||||||| ||||      || ||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||    
T  13014159 ccataaacacagacaccgtgatttcaaaaccaaaacaataaagattacataaaaatacccatacaagacatagggtgttgccaccagtcagggtaactga 13014258  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    | |||||   ||||||||||||||||||||||| ||| || |||||||||||||||||||||| || || ||| || |||||||| ||| ||||||||||    
T  13014259 aagcaaacatatgcaacctagctttaagccactcgaatgaaagtaatttcactctgtcaaatataacgctaattgaagtagccttttgattaaaaatgtg 13014358  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
     || |||||||| |||||||| |||| |||||| || ||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| |||||     
T  13014359 gttgttcctctcattccaaatcgtccacacacaagcaagccaaattaattgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatgtccaaactga 13014458  T
Q  420 aaataatggtctct 433  Q
    | ||||||||||||    
T  13014459 agataatggtctct 13014472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 38472759 - 38472841
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaa 107  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||| | ||| |||| ||||||||||||    
T  38472759 aacaaggcaaaatggatttcataaccagaagtgattcatctcgcacaagatgtgcaaaaaagaatcacttaaaaacgatacaa 38472841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 55339428 - 55339655
Alignment:
Q  50 cagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtgccatgaatacaaacaccgt------ 143  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||| ||| | |||||| |||||||||||||||| |   ||  ||| || | |          
T  55339428 cagaagtaattcatctcgcacaaggtgtgcaaaagagaatcactt-aaatcaatacaa-tgtcagttcaccggtggcgcaaacgcaaccagcatggtttc 55339525  T
Q  144 aaattcaaaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggcaaaagaatgcaacctagctt 243  Q
    | || ||||| ||||||| ||||||| ||  || ||||||||||||||||||||||||||| |||||| ||| |||| |||||   ||| |   | ||||    
T  55339526 agatccaaaaacaaagaagattacatgaatatacccatacaagacatagggtgttgccaccagtcatgataattgaaagcaaacacatgtagtttggctt 55339625  T
Q  244 taagccactggaaagagagtaatttcactc 273  Q
    | ||||||||||| ||||||||||||||||    
T  55339626 ttagccactggaatgagagtaatttcactc 55339655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 30187269 - 30187300
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||||    
T  30187269 agtgattcatctcgcacaaggtgtgcaaaaga 30187300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 25 - 433
Target Start/End: Complemental strand, 12336240 - 12335828
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||| ||| | || |||  ||||||||  |||||||| |||||    
T  12336240 aacaagccaaaatgaaattaataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcatttaaaacagatacaata-tcagttcatcggtg 12336142  T
Q  125 ccatgaatacaa-acaccgtaaatt------caaaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaact 217  Q
    |||  ||||| | |||||| | |||      | ||| ||||||| |||||||  || || |||||||||||||| |||||||||||| ||||||||||||    
T  12336141 ccac-aataccagacaccg-agattactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatatggtgttgccaccagtcatggtaact 12336044  T
Q  218 gaaggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatg 317  Q
    ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||  ||  |||| ||| ||||||||||||||| ||||||||    
T  12336043 gaaagcaaacgaatgcaacctagctttaagccactggaatgagagtaatttcactttgtcaggtatcatgctaattgatgtagccttctgattaaaaatg 12335944  T
Q  318 tgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaact 417  Q
     | || |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||| | |||||||||||| ||||    
T  12335943 cggttgttcctctccttccaaatggtccacacacaagccagccaaattaactgtaaacaagaatgtgaaaaatgcgttaaacccgccatatgtccaaact 12335844  T
Q  418 ggaaataatggtctct 433  Q
    | | ||||||||||||    
T  12335843 gaagataatggtctct 12335828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 410
Target Start/End: Original strand, 22022151 - 22022256
Alignment:
Q  309 gtaaaaatgtgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaa----aagaatgtgaaaagtgcggtaatctcgcc 404  Q
    |||||| || |||| ||||||||||||||| |||||| |||||| || |||||||||||||||||||    ||||||||||||| || ||||| | || |    
T  22022151 gtaaaattgcgattgttcctctccttccaagtggtccacacacaagcgagccaaattaactgtaaaaaaaaaagaatgtgaaaaatgtggtaaacccgtc 22022250  T
Q  405 atatgt 410  Q
    ||||||    
T  22022251 atatgt 22022256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 17529338 - 17529304
Alignment:
Q  311 aaaaatgtgattattcctctccttccaaatggtcc 345  Q
    ||||| |||||||||||||||||||||||||||||    
T  17529338 aaaaacgtgattattcctctccttccaaatggtcc 17529304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 34316090 - 34316122
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||| |||||||||||||||    
T  34316090 aagtgattcatctcgcaaaaggtgtgcaaaaga 34316122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 32 - 430
Target Start/End: Original strand, 25599203 - 25599606
Alignment:
Q  32 caaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtgccatgaa 131  Q
    ||||||||| || |||| || ||||||||||||| ||||||||||||||||||| ||| |||| |||  ||||||| |||||||||||||||||||  ||    
T  25599203 caaaatggaattaataaccataagtgattcatcttgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgccacaaa 25599302  T
Q  132 tacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggcaaa 226  Q
     ||||||| ||| | ||||     ||||||||||| ||||||||||| || ||||||||||||||||||||||||||  ||||||||||||| | |||||    
T  25599303 cacaaacatcgtgatttcaaaaccaaagcaaagaagattacataaaaatacccatacaagacatagggtgttgccactagtcatggtaactgcaagcaaa 25599402  T
Q  227 agaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtgattattc 326  Q
       ||||||||||||||||||||||||||| || |||||||||||| ||||| |||  | || ||| ||||||||||||||| |||||||||  || |||    
T  25599403 catatgcaacctagctttaagccactggaatgaaagtaatttcactttgtcagatatgacgctaattgatgtagccttctgattaaaaatgtagttgttc 25599502  T
Q  327 ctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactggaaataat 426  Q
    |||||||||||||| |||| ||| || |||| ||||||||||||||||||||| |||||||| ||  |||| | ||||||||| || ||||| | |||||    
T  25599503 ctctccttccaaattgtccacacgcaagccaaccaaattaactgtaaaaaagattgtgaaaaatgtcgtaagcccgccatatgcccaaactgaagataat 25599602  T
Q  427 ggtc 430  Q
    ||||    
T  25599603 ggtc 25599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 25 - 432
Target Start/End: Original strand, 36964466 - 36964876
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||||| || |||| || ||| ||||| ||||||| ||||||||||||||| ||| |||| |||   |||||| ||||||||||||||||    
T  36964466 aacaagccaaaatggaattaataaccaaaagagattcgtctcgcagaaggtgtgcaaaagagaatcacttcaaacatatacaaatgtcagttcaccggtg 36964565  T
Q  125 ccatgaatacaaacaccgtaaattcaaaagcaaa-----gaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    || | || | | |||||||   ||||||| ||||     ||| ||||||||||| || |||||||||||||||  |||||||| | ||||||||||||||    
T  36964566 ccgtaaacatagacaccgtgttttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacatag--tgttgccatcagtcatggtaactga 36964663  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    | |||||   |||||||||||||||||||||||| || || |||| ||||||||| ||| ||  || || ||| || |||||||||||| ||||||||||    
T  36964664 aagcaaacatatgcaacctagctttaagccactgaaatgaaagtactttcactctatcagatttaacgctaattgaagtagccttctgattaaaaatgtg 36964763  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
     || ||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||     
T  36964764 gttgttcctctccttccaaattgtccacacacaagccagtcaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatgttcaaactga 36964863  T
Q  420 aaataatggtctc 432  Q
    | |||||||||||    
T  36964864 agataatggtctc 36964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 16238689 - 16238925
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||  |||||||||| ||||    
T  16238689 aacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgaaacaaaagtcagttcactggtg 16238788  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||| |  |  ||||     ||| ||||||| ||||||| ||| || ||||||||||||||||||||||||||  |||||| |||||||    
T  16238789 ccataaatacagacatcaaactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccactagtcatgataactga 16238888  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaa 256  Q
    ||||||||||||||||||||||||||||||| |||||    
T  16238889 aggcaaaagaatgcaacctagctttaagccagtggaa 16238925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 22670007 - 22670117
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||| ||||||||| ||||||||| | |||||||||||||||||||||||| ||| |||| ||||||||||||  |||| ||| | ||||    
T  22670007 aacaagccaaaatgaattttataaccagaagtgagtaatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcaattcgctggtg 22670106  T
Q  125 ccatgaataca 135  Q
    |||| ||||||    
T  22670107 ccataaataca 22670117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 45066113 - 45066020
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttca 118  Q
    |||||| |||| || |||||||||  ||||||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||  |||||||||    
T  45066113 aacaagccaaattgaattttataacgagaagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttca 45066020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 410
Target Start/End: Original strand, 44332259 - 44332364
Alignment:
Q  309 gtaaaaatgtgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaa----aagaatgtgaaaagtgcggtaatctcgcc 404  Q
    |||||| || |||| ||||||||||||||| |||||| |||||| || |||||||||||||||||||    ||||||||||||| || ||||| | || |    
T  44332259 gtaaaattgcgattgttcctctccttccaagtggtccacacacaagcgagccaaattaactgtaaaaaaaaaagaatgtgaaaaatgtggtaaacccgtc 44332358  T
Q  405 atatgt 410  Q
    ||||||    
T  44332359 atatgt 44332364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 959907 - 959851
Alignment:
Q  50 cagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaa 107  Q
    ||||||| |||||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  959907 cagaagtaattcatctcgcacaagatgtgcaaaagagaatcactt-aaaacgatacaa 959851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Complemental strand, 26311189 - 26311158
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||||    
T  26311189 agtgattcatctcgcacaaggtgtgcaaaaga 26311158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 33033647 - 33033677
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaag 84  Q
    |||||||||||||||||||||||||||||||    
T  33033647 agtgattcatctcgcacaaggtgtgcaaaag 33033677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 12111202 - 12111230
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaa 81  Q
    |||||||||||||||||||||||||||||    
T  12111202 aagtgattcatctcgcacaaggtgtgcaa 12111230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 433
Target Start/End: Original strand, 2775 - 3185
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| |||||||||||| ||||    |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  |||||||||| ||||    
T  2775 aacaagccaaaatggatttcataac---aagtgattcatctcgcacaatgtgtgcaaaagagaatcacttgaaaacgatacaaaagtcagttcactggtg 2871  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||| |||||| ||| |||   ||||     ||| ||||||| |||| || ||| ||  |||||||||||||||||||||||||| ||||||||||||||    
T  2872 ccataaatacagacatcgtgctttcacaaccaaaacaaagaagattatatgaaaatactcatacaagacatagggtgttgccaccagtcatggtaactga 2971  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||| ||||    
T  2972 aggcaaaagaatgcaacccagctttaagctattggaatgagagtaatttcactttgtcggatagaatgctaattgatgtagccttatgagtaaaagtgtg 3071  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactgg 419  Q
    ||| |||||||||||||||      |  ||||| || |||||||||||||||||||||||||||||||  ||| |||| | ||| |||||||| ||| |     
T  3072 attgttcctctccttccaagaccagcatacacaagcgagccaaattaactgtaaaaaagaatgtgaaatatgcagtaaacccgcaatatgtccaaaccga 3171  T
Q  420 aaataatggtctct 433  Q
    | ||||||||||||    
T  3172 agataatggtctct 3185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 27420339 - 27420695
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| |||||| || || |||| |||||||||||||||||||||||||||||||||||| ||| |||| |||  ||||||| ||||||||||||||||    
T  27420339 aacaagccaaaatagaattaataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtg 27420438  T
Q  125 ccatgaatacaaacaccgtaaattcaaaagcaaag-----aatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    |||  |  ||| || | || |  |||||| ||||      || ||||||||||| || |||||||||| ||| | |||||||||   |||||||||||||    
T  27420439 ccacaagcacagactctgtgatctcaaaaccaaaacaaaaaagattacataaaaatacccatacaagatataagttgttgccacaa-tcatggtaactga 27420537  T
Q  220 aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctgagtaaaaatgtg 319  Q
    |  ||||   ||||||||||||||||||||||||||| || |||||||||||||||||| | | || || ||| ||||||||||||||| ||||||||||    
T  27420538 aaacaaacatatgcaacctagctttaagccactggaatgaaagtaatttcactctgtcagacataacgctaattgatgtagccttctgattaaaaatgtg 27420637  T
Q  320 attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaa 377  Q
     || ||||||||||||||||| || | |||| | ||||||||||||||||||||||||    
T  27420638 gttgttcctctccttccaaattgttcacacataagccagccaaattaactgtaaaaaa 27420695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 27420705 - 27420767
Alignment:
Q  371 taaaaaagaatgtgaaaagtgcggtaatctcgccatatgtccgaactggaaataatggtctct 433  Q
    ||||||||||||| |||| |||||||| | |||||||||||| ||||  | ||||||||||||    
T  27420705 taaaaaagaatgtaaaaaatgcggtaaacccgccatatgtccaaactaaagataatggtctct 27420767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 42747307 - 42747278
Alignment:
Q  56 tgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||    
T  42747307 tgattcatctcgcacaaggtgtgcaaaaga 42747278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 11961682 - 11961714
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||| |||||||||||||||||||||||||||    
T  11961682 aagtggttcatctcgcacaaggtgtgcaaaaga 11961714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 14919150 - 14919118
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||| ||||||||||    
T  14919150 aagtgattcatctcgcacaaggcgtgcaaaaga 14919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 9064537 - 9064824
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| ||||||||| || |||| || |||||||||||||||||||| |||||||||||| ||| |||| |||| ||||||||  |||||||| |||||    
T  9064537 aacaagccaaaatggaattaataaccataagtgattcatctcgcacaaagtgtgcaaaagagaatcacttaaaaaagatacaata-tcagttcatcggtg 9064635  T
Q  125 ccatgaatacaa-acaccgtaaattcaaaagcaaa-----gaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactg 218  Q
    |||  |||||   ||||| | | | | ||| ||||     ||| |||||||  || || ||||||||||||||||||||||||||| |||||||||||||    
T  9064636 ccac-aatacccgacaccatgattactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatagggtgttgccaccagtcatggtaactg 9064734  T
Q  219 aaggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaatagaatgccaatggatgtagccttctga 308  Q
    || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||  || | ||| |||||||||||||||    
T  9064735 aaagcaaacgaatgcaacctagctttaagccactggaatgagagtaatttcactttgtcagatatcatcctaattgatgtagccttctga 9064824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 20428474 - 20428440
Alignment:
Q  55 gtgattcatctcgcacaaggtgtgcaaaagataat 89  Q
    |||||||||| ||||||||||||||||||||||||    
T  20428474 gtgattcatcccgcacaaggtgtgcaaaagataat 20428440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 85
Target Start/End: Complemental strand, 22099169 - 22099139
Alignment:
Q  55 gtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||||||||||||    
T  22099169 gtgattcatctcgcacaaggtgtgcaaaaga 22099139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 38478 - 38685
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaaagataataacttgaaaacgatacaattgtcagttcaccggtg 124  Q
    |||||| || |||| ||||||||||||||| ||||| ||| || ||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  38478 aacaagccacaatgaattttataatcagaaatgatttatcccgtacaaggtgtgcaaaagagaatcacttaaaaacgatacaattgtcagttcactggtg 38577  T
Q  125 ccatgaatacaaacaccgtaaattca-----aaagcaaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga 219  Q
    ||||||||||| ||| ||| | ||||     ||| |||| || ||||||||||| ||  |||||||||||||||||||| ||||| ||||||||||||||    
T  38578 ccatgaatacagacatcgtgatttcaaaaccaaaacaaataagattacataaaaatactcatacaagacatagggtgttaccacctgtcatggtaactga 38677  T
Q  220 aggcaaaa 227  Q
    | ||||||    
T  38678 aagcaaaa 38685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 183 - 432
Target Start/End: Original strand, 48477131 - 48477380
Alignment:
Q  183 caagacatagggtgttgccaccggtcatggtaactgaaggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcaaata 282  Q
    ||||| |||| ||||||||||| |||||||||||| || ||||| ||||| ||  ||||||| ||||| || || || |||| ||||||  ||||   ||    
T  48477131 caagatatagagtgttgccaccagtcatggtaactcaaagcaaacgaatgtaaattagcttttagccagtgaaatgaaagtagtttcaccatgtctgcta 48477230  T
Q  283 gaatgccaatggatgtagccttctgagtaaaaatgtgattattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatg 382  Q
     | ||  ||| |||||||| |||||| ||||||||||||| || |||||||||||||||||||   |||| |||||||| ||||  ||||||||||||||    
T  48477231 tattgttaattgatgtagcattctgattaaaaatgtgattgtttctctccttccaaatggtccaagcacaagccagccatattatatgtaaaaaagaatg 48477330  T
Q  383 tgaaaagtgcggtaatctcgccatatgtccgaactggaaataatggtctc 432  Q
    |||||| ||||||||||  |||| ||| || ||||| | |||||||||||    
T  48477331 tgaaaaatgcggtaatccagccaaatgcccaaactgaagataatggtctc 48477380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 16237049 - 16236992
Alignment:
Q  25 aacaagtcaaaatggattttataatcagaagtgattcatctcgcacaaggtgtgcaaa 82  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  16237049 aacaagccaaaatgaatttcataatcagaagtgattcatctcgcacaaagtgtgcaaa 16236992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 33799147 - 33799179
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||||||||||||||    
T  33799147 aagtgattcatctcgcacaaggtgtgcaaaaga 33799179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 85
Target Start/End: Complemental strand, 27895536 - 27895506
Alignment:
Q  55 gtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||||||||||||    
T  27895536 gtgattcatctcgcacaaggtgtgcaaaaga 27895506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 17541541 - 17541509
Alignment:
Q  53 aagtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||| |||||||||||||||||||||||||||    
T  17541541 aagtggttcatctcgcacaaggtgtgcaaaaga 17541509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 14046 - 14117
Alignment:
Q  155 caaagaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactgaaggcaaa 226  Q
    ||||||| ||||||| ||| || |||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  14046 caaagaagattacattaaaatacccatacaagatatagggtgttgccaccagtcatggtaactgaaagcaaa 14117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 480 - 511
Alignment:
Q  54 agtgattcatctcgcacaaggtgtgcaaaaga 85  Q
    ||||||||||||||||||||||||||||||||    
T  480 agtgattcatctcgcacaaggtgtgcaaaaga 511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 4855 - 4883
Alignment:
Q  57 gattcatctcgcacaaggtgtgcaaaaga 85  Q
    |||||||||||||||||||||||||||||    
T  4855 gattcatctcgcacaaggtgtgcaaaaga 4883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University