View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_29 (Length: 443)
Name: NF19103_high_29
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 43472328 - 43471913
Alignment:
| Q |
12 |
atgaacataaataagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagttaaaaaagcacacaatataagaaataca |
111 |
Q |
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| T |
43472328 |
atgaacataaataagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagtaaaaaaagcacacaatataagaaataca |
43472229 |
T |
|
| Q |
112 |
aatg-catctgtaaactaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttaccnnnnnnncttatt |
210 |
Q |
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| T |
43472228 |
aacggcatctgtaaaccaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttacctaaaaaacttatt |
43472129 |
T |
|
| Q |
211 |
gtcttgagtactaatatggaagatctaaatgagttcaaagattgaattatggtgaaaattggtagtgcagaaaagtgagtagaaaatggattataattat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
43472128 |
gtcttgagtactaatatggaagatctaaatgagttcaaagattgaattatggtgaaaattggtagtgcagaaaagtgagtagaatatggcttataattat |
43472029 |
T |
|
| Q |
311 |
taagtggtggattgtgatagttgaagcaaataaggtgtagttggtgatggtgacatcaagttttacttgggaaacatacgaaaaaagagaaagagagagg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43472028 |
taagtggtggattgtgatagttgaagcaaataaggtgtagttggtgatggtgacatcaagttttacttgggaaacatacgagaaaagagaaagagagagg |
43471929 |
T |
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| Q |
411 |
tttgagggatagatag |
426 |
Q |
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| T |
43471928 |
tttgagggatagatag |
43471913 |
T |
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