View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_30 (Length: 442)
Name: NF19103_high_30
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Original strand, 24884000 - 24884411
Alignment:
| Q |
13 |
aatatccaatgcttttaatactgataaccttttggttttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
112 |
Q |
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| T |
24884000 |
aatatccaatgcttttaatactgataaccttttggttttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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| Q |
113 |
cctttcccctttttgttttctttggtcagtgcctctttttcaattaaaccagggatgagtctctcaggatattctcataatacttcatgttttcatgtaa |
212 |
Q |
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| T |
24884100 |
cctttcccctttttgttttctttggtcagtgcctctttttcaattaaaccagggatgagtctctcaggatattctgataatacttcatgttttcatgtaa |
24884199 |
T |
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| Q |
213 |
ttgcaaaaccatgataaagttaccgacctagttctaaagtgcaaatgtgcaggtttataataactaagtagaaactaatcttagaagataacctaagata |
312 |
Q |
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| T |
24884200 |
ttgcaaaaccatgataaagttaccgacctagttctaaagtgcaaatgtgcaggtttataataactaagtagaaactaatcttagaagataacctaagata |
24884299 |
T |
|
| Q |
313 |
acagatcaaatgtgcaggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatc |
412 |
Q |
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| T |
24884300 |
acagatcaaatgtgcaggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatc |
24884399 |
T |
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| Q |
413 |
ttggtctgacct |
424 |
Q |
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| T |
24884400 |
ttggtctgacct |
24884411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 32600072 - 32599982
Alignment:
| Q |
328 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttggtc |
418 |
Q |
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| T |
32600072 |
aggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttggtc |
32599982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 32589624 - 32589535
Alignment:
| Q |
328 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttggt |
417 |
Q |
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| T |
32589624 |
aggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttggt |
32589535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 34577374 - 34577279
Alignment:
| Q |
327 |
caggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttggtctgac |
422 |
Q |
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||||| ||||||||||| || ||| | |||| |||| || ||||||||||||||||||||||| || |||| ||| ||||| |||||||||||| |
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| T |
34577374 |
caggtatgggcaggtccccttagtaaaaacaaagtagcagtggtcttatggaatagaagttcatcaaatgcaacagttactgcgtcttggtctgac |
34577279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 34592869 - 34592776
Alignment:
| Q |
328 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttggtctga |
421 |
Q |
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||||||||||||||||||| ||||| |||| |||||| || | ||||||||||| || ||||| || |||| |||| |||||| |||||||| |
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| T |
34592869 |
aggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaatgcaacggtaattgcatcctggtctga |
34592776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 34593429 - 34593372
Alignment:
| Q |
50 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggt |
107 |
Q |
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| T |
34593429 |
ttgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
34593372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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