View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_31 (Length: 439)
Name: NF19103_high_31
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 42183813 - 42184224
Alignment:
| Q |
18 |
acttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactatggctgctcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
42183813 |
acttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactgtggctgttcct |
42183912 |
T |
|
| Q |
118 |
aatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttcccttgctttgcataatagcagct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42183913 |
aatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttccctttctttgcataatagcagct |
42184012 |
T |
|
| Q |
218 |
ttgagggttcaaataagcaaccaaggtgagtttatatctgtcttttgctatatctgtttagaatcacatgttttgattcatatcatatgagtttcatgaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184013 |
ttgagggttcaaataagcaaccaaggtgagtttatatctgtattttgctatatctgtttagaatcacatgttttgattcatatcatatgagtttcatgaa |
42184112 |
T |
|
| Q |
318 |
atcaggttgccaatgtgattttgttgaaggcttaagcttcaaagtatagcttttgctaaaatctgtggttcttctaaatttatcatgaatccaaacatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42184113 |
atcaggttgccaatgtgattttgttgaaggcttaagcttctaagtatagcttttgctaaaatctgtgattcttctaaatttatcatgaatccaaacatgt |
42184212 |
T |
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| Q |
418 |
actatgcctatg |
429 |
Q |
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|||||||||||| |
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| T |
42184213 |
actatgcctatg |
42184224 |
T |
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