View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_35 (Length: 423)
Name: NF19103_high_35
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_35 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 26 - 423
Target Start/End: Original strand, 4141942 - 4142339
Alignment:
| Q |
26 |
ccctcttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgt |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4141942 |
ccctgttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgt |
4142041 |
T |
|
| Q |
126 |
tgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacgg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142042 |
tgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacgg |
4142141 |
T |
|
| Q |
226 |
ttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142142 |
ttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctactctcaaaagatgcatcccaaacctc |
4142241 |
T |
|
| Q |
326 |
tggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaacttattattagtaatagagatt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142242 |
tggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaacttattattagtaatagagatt |
4142339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 4129594 - 4129979
Alignment:
| Q |
30 |
cttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgag |
129 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129594 |
cttaacaatggtagtattcatctcaagcatattatttacctgccaatgacatcactcaaagttacattgttgtttgagttagatcgatgactttgttgag |
4129693 |
T |
|
| Q |
130 |
aagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttga |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
4129694 |
aagattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatctcacttatgagcatcaaaacaacagttga |
4129793 |
T |
|
| Q |
230 |
tatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctgga |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||| || |
|
|
| T |
4129794 |
tatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgctttcaaaggatgcatcccatacctctcga |
4129893 |
T |
|
| Q |
330 |
tctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaacttattattagtaata |
417 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| || ||||| |
|
|
| T |
4129894 |
tctattagggatatagtattttcttctaaccatagcttccatgcctagaaa--gaaacaaaacaaagataaagttattactaataata |
4129979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 42 - 380
Target Start/End: Original strand, 4119570 - 4119912
Alignment:
| Q |
42 |
agtattgatcccatg-catattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgagaagattctgta |
140 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| || | |||||||||||||||| |
|
|
| T |
4119570 |
agtattgatcccattacatattatttacctgcctgtgacatcactcaaagttacattgttgtttgagttagattgatgcctcttttgagaagattctgta |
4119669 |
T |
|
| Q |
141 |
cttcga---gaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttgatatacttg |
237 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
4119670 |
gtactctttgaattttgcttgtgaacaaatgcaactttacctggaggtggaagatgccttatctcatttatgagcatcaaaactacggttgatatacttg |
4119769 |
T |
|
| Q |
238 |
gtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctggatctattag |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4119770 |
gtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctgctctcaaaacatgcatcccatacctctggatctattag |
4119869 |
T |
|
| Q |
338 |
agatataatgttttcttctaaccatagcttccatgcctagtaa |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4119870 |
agatataatgttttcttctaaccatagcttccatgccttgtaa |
4119912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 65 - 391
Target Start/End: Original strand, 4159120 - 4159446
Alignment:
| Q |
65 |
ttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgagaagattctgtacttcgagaattttgcttgtgaaca |
164 |
Q |
| |
|
|||||||||| ||| || |||| |||||| ||||||||||||||||| | ||||||| ||||||||||||| ||| ||||||| |||||| ||| |
|
|
| T |
4159120 |
ttacctgccttggacttcactcagagttacactgttgtttgagttagattgttgacttttttgagaagattctccactcttggaatttttcttgtggaca |
4159219 |
T |
|
| Q |
165 |
aatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttgatatacttggtctttcttttggaagttcttgcacac |
264 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
4159220 |
aatgcaacttttcctggaggaggaagatgtgtaatctcacttatgagcatcaaaacaactgttgatatatttggtctgtctcttggaagttcttgcacac |
4159319 |
T |
|
| Q |
265 |
aaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctggatctattagagatataatgttttcttctaaccatag |
364 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4159320 |
agagaagtcctatgtgtatgcacctcaacatgctgctctcaaaagatgcatcccaaacctctcgatctattagagatataatgttttcttctaaccatag |
4159419 |
T |
|
| Q |
365 |
cttccatgcctagtaattgaaacaaaa |
391 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
4159420 |
cttccatgcctagtaaaagaaacaaaa |
4159446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 29 - 380
Target Start/End: Original strand, 4149967 - 4150322
Alignment:
| Q |
29 |
tcttaacaatggtagtattgatcccatgcatatta-tttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttg |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||||||||||| || || || | |||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
4149967 |
tcttaacaattatagtattgatcccatgcatgttagtttacctgccttgaacttcactgagagttacattgttgtttgagttagattgatgacttttttg |
4150066 |
T |
|
| Q |
128 |
agaagattctgtacttcga---gaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacg |
224 |
Q |
| |
|
||||||||||||| | | ||| ||||||||||||||||||||||| | || ||||| ||||||||||| || ||||||| |||||||||||| || |
|
|
| T |
4150067 |
agaagattctgtagtactctttgaactttgcttgtgaacaaatgcaactctccccggaggaggaagatgtgtaatttcacttacaagcatcaaaacaaca |
4150166 |
T |
|
| Q |
225 |
gttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacct |
324 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||| |||| |
|
|
| T |
4150167 |
gttgatatatttggtctgtctcttggaagttcttgtacacaaagaagtccgatgtgtatgcaccttaacatgctgctctcaaaacatgcatcccatacct |
4150266 |
T |
|
| Q |
325 |
ctggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaa |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4150267 |
ctggatctattagagatataatgttttcttctaaccatagcttccatgcctggtaa |
4150322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 2716566 - 2716621
Alignment:
| Q |
237 |
ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa |
292 |
Q |
| |
|
||||| || |||| || ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2716566 |
ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa |
2716621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 2723189 - 2723244
Alignment:
| Q |
237 |
ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa |
292 |
Q |
| |
|
||||| || |||| || ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2723189 |
ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa |
2723244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 2745020 - 2745075
Alignment:
| Q |
237 |
ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa |
292 |
Q |
| |
|
||||| || |||| || ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2745020 |
ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa |
2745075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University