View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_high_42 (Length: 403)
Name: NF19103_high_42
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 15838608 - 15838228
Alignment:
| Q |
16 |
caggaagaacc-accattagtctctatattggtaagtagacaaaagcatactc--aattaaatgactctaaattaaaagacaccacccattttttccatt |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15838608 |
caggaagaacccaccattagtctctatattggtaaatagacaaaagcatactctaaattaaatgactctaaattaaaagacaccacccattttttccatt |
15838509 |
T |
|
| Q |
113 |
ttgccaactccacgagcggccagctcagaattcttccatgcacatattcgatggaaaagatctaaatcacaagataaattaatcttgcggagtttgggaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15838508 |
ttgccaactccacgagcggccagctcagaattcttccatgcacatattcgatggaaaagatctaaatcacaagataaattaatcttgcggagtttgggaa |
15838409 |
T |
|
| Q |
213 |
gtggcaagtattgatcatcaatgttcagcacaaaattattctttgtaccatgatagtaatgataatcgaggttgagttcttcgagtaaaggaaaacgatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15838408 |
gtggcaagtattgatcatcaatgttcagcacaaaattattcttagtaccatgatagtaatgataatcgaggttgagttcttcgagtaaaggaaaacgatc |
15838309 |
T |
|
| Q |
313 |
agcgatgaataagatatctgtctcgaagatggcagtcattatcgtgcaattgaaagattttgataaattttgtaacctttg |
393 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15838308 |
agcgatgaataagatatccgtcttgaagatggcagtcattatcgtgcaattgaaagattttgataaattttgtaacctttg |
15838228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 39253332 - 39253284
Alignment:
| Q |
184 |
agataaattaatcttgcggagtttgggaagtggcaagtattgatcatca |
232 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||| ||||||||||| |
|
|
| T |
39253332 |
agataaattaatcttgcgcagtttgggcagtgccaagcattgatcatca |
39253284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 2368138 - 2368102
Alignment:
| Q |
184 |
agataaattaatcttgcggagtttgggaagtggcaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2368138 |
agataaattaatcttgcggagtttgggaagtgccaag |
2368102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 12126471 - 12126507
Alignment:
| Q |
184 |
agataaattaatcttgcggagtttgggaagtggcaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12126471 |
agataaattaatcttgcggagtttgggaagtgccaag |
12126507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 2373700 - 2373665
Alignment:
| Q |
185 |
gataaattaatcttgcggagtttgggaagtggcaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2373700 |
gataaattaatcttgcggagtttgggaagtgccaag |
2373665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 12124418 - 12124449
Alignment:
| Q |
184 |
agataaattaatcttgcggagtttgggaagtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12124418 |
agataaattaatcttgcggagtttgggaagtg |
12124449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University