View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_50 (Length: 388)
Name: NF19103_high_50
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 5010172 - 5009806
Alignment:
| Q |
1 |
tctgcactgtctgtccgtgcagatccaacggtcaccgatgtctgaatgcttgactatggtcactacagacaatccgattttgaaaataaaatagtcgttc |
100 |
Q |
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| T |
5010172 |
tctgcactgtctgtccgtgcagatccaacggtcaccgatgtgtgaatgcttgactatggtcactacagacaatccgattttgaaaataaaatagtcgttc |
5010073 |
T |
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| Q |
101 |
taggttatgtaactattggttttgatgagagaaaaacatgcaatattcaacgagtcaagggagaaaccaaatattaccacgccataagaataacgagtgg |
200 |
Q |
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| T |
5010072 |
taggttatgtaactattggttttgatgagagaaaaacatgcaatattcaacgagtcaagggagaaaccaaatattaccacgccataagaataacgagtgg |
5009973 |
T |
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| Q |
201 |
nnnnnnnnnnnnnggctttacaattacaagagattgaatcaataagaaagatcaagcaaataaat-aaaatattgatagaaataacaaaagacaagaaat |
299 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5009972 |
aaaaaatgaaaaaggct------ttacgagagattgaatcaataagaaagatcaagcaaataaataaaaatattgatagaaataacaaaagacaagaaat |
5009879 |
T |
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| Q |
300 |
gagtattttatacctggggttcaaaagatgaatgttgctaatcctttcccatggaatatagtgcagaaaaatt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5009878 |
gagtattttatacctggggttcaaaagatgaatgttgcttatcctttcccatggaatatagtgcagaaaaatt |
5009806 |
T |
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