View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_51 (Length: 386)
Name: NF19103_high_51
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_51 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 162 - 386
Target Start/End: Original strand, 16687639 - 16687863
Alignment:
| Q |
162 |
aggatataaaagtgcgacttaatgtcacactcaagctacgatgacaatttcacaacttttcgcacgctttcctcctcatttctcttcactcatttgagcg |
261 |
Q |
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| T |
16687639 |
aggatatagaagcgcgacttaacgtcacactcaagctacgatgacaatttcaccacttttcgcacactttcctcctcatttctcgtcactcatttgagcg |
16687738 |
T |
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| Q |
262 |
ttagagtgctgacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
361 |
Q |
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| T |
16687739 |
ttagagtgctaacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
16687838 |
T |
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| Q |
362 |
gcatgatcatattcgacaatgcatc |
386 |
Q |
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| T |
16687839 |
gcatgatcatattcgacaatgcatc |
16687863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 16687323 - 16687454
Alignment:
| Q |
19 |
tttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttggagtactcgagttaaagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16687323 |
tttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttggagtactcgagttaacgat |
16687422 |
T |
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| Q |
119 |
cacatgcgtctttcagacatcattgatgtgtt |
150 |
Q |
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| T |
16687423 |
cacatgtttctttcagacatcattgatgtgtt |
16687454 |
T |
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