View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_66 (Length: 339)
Name: NF19103_high_66
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 35697241 - 35697553
Alignment:
| Q |
17 |
agaaaactgggaaacaaacgaaagggaaaggtaaaggtaagcatcgaaggcaaggtagcggtttgttttcgtgctttggaacagcattagggtgtgagat |
116 |
Q |
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| T |
35697241 |
agaaaactgggaaacaaacgaaagggaaaggtaaaggtaagaatcgaaggcaaggtagcggtttgttttcgtgctttggaacagcattagggtgtgagat |
35697340 |
T |
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| Q |
117 |
ttcaataacttgtggagggggtaaccataagaagagtggtagcactaataagcctcgtgttgctgactctgaactaacttatgaatcgtcttatatttga |
216 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35697341 |
ttcgataacttgcggagggggtaaccataagaagagtggtagcactaataaacctcgtgttgctgactctgaactaacttatgaatcgtcttatatttga |
35697440 |
T |
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| Q |
217 |
tgaggtgcttgttgtaaaattaattggtaattttaatggttgtgatgcatatatagtttggattagaaatagaaatttgattcatttggggatgttgagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35697441 |
tgaggtgcttgttgtaaaattaattggtaatttttatggttgtgattcatatatagtttggattagaaatagaaatttgattcatttggggatgttgagt |
35697540 |
T |
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| Q |
317 |
attgtctcctttg |
329 |
Q |
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||||||||||||| |
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| T |
35697541 |
attgtctcctttg |
35697553 |
T |
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