View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_69 (Length: 331)
Name: NF19103_high_69
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 34653715 - 34653409
Alignment:
| Q |
10 |
ataatactaagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
109 |
Q |
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| T |
34653715 |
ataatactaagagaaagaatcggagtaatagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
34653616 |
T |
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| Q |
110 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
209 |
Q |
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| T |
34653615 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
34653516 |
T |
|
| Q |
210 |
gaaatggatgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatgg |
309 |
Q |
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| T |
34653515 |
gaaattgatgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatgg |
34653416 |
T |
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| Q |
310 |
agttttt |
316 |
Q |
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| T |
34653415 |
agttttt |
34653409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 17173922 - 17173640
Alignment:
| Q |
34 |
gtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgat |
133 |
Q |
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| T |
17173922 |
gtaagagttcaaagggaatacttcttctgaaatacataatggaagtcaccgatgctaaggaagttgaaaaggagccgatgacgtattctacgagcatgat |
17173823 |
T |
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| Q |
134 |
gaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggtatgctccaatg |
233 |
Q |
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| T |
17173822 |
ggatattaaaaatcaactgaattttgaaagctcaaagagtgattttagaactgaaggtttgactactccagagaacaaaatttgtgagtatgttccaatg |
17173723 |
T |
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| Q |
234 |
atgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttt |
316 |
Q |
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| T |
17173722 |
atgttcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcatatggaattgagttttt |
17173640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 13643818 - 13644065
Alignment:
| Q |
18 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
117 |
Q |
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|||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| | ||| ||| ||| |||||||||| ||||||| | |
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| T |
13643818 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagtcacttgtgccaagaaagttgaaaaggagatgatgacta |
13643917 |
T |
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| Q |
118 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatgga |
217 |
Q |
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| T |
13643918 |
attctctgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatgaaattgg |
13644017 |
T |
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| Q |
218 |
tgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
265 |
Q |
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| T |
13644018 |
tggctatgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13644065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 13706267 - 13706514
Alignment:
| Q |
18 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
117 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||| | | ||| ||| ||| |||||||||| |||||| | |
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| T |
13706267 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagttacttctgccaagaaagttgaaaaggagatgatgaata |
13706366 |
T |
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| Q |
118 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatgga |
217 |
Q |
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||||| ||||| ||||||| | |||||||| ||||| | |||||| || |||||||||||| ||||||||||||| || |||| | || | ||| | |
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| T |
13706367 |
attctccgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatggaattgg |
13706466 |
T |
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| Q |
218 |
tgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
265 |
Q |
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||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
13706467 |
tggctatgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13706514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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