View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_70 (Length: 330)
Name: NF19103_high_70
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 31749884 - 31750185
Alignment:
| Q |
17 |
attttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgaca |
116 |
Q |
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| T |
31749884 |
attttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgaca |
31749983 |
T |
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| Q |
117 |
cctttgttctattacactcctctggtggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccatctctggaaga |
216 |
Q |
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| T |
31749984 |
cctttgttctattacactcctctggtggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccatctctggaaga |
31750083 |
T |
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| Q |
217 |
ttgacaaattcgattttttcgtctgcattagcgcgtatatgggcgttgtctttggcagtgttgaaattggcttagtcatagcagtatgtatcaatagtct |
316 |
Q |
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| T |
31750084 |
ttgacaaattcgattttttcgtctgcattagcgcgtatatgggcgttgtctttggcagtgttgaaattggcttagtcatagcagtatgtatcaatagtct |
31750183 |
T |
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| Q |
317 |
ct |
318 |
Q |
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|| |
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| T |
31750184 |
ct |
31750185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 38216009 - 38215718
Alignment:
| Q |
18 |
ttttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgacac |
117 |
Q |
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| T |
38216009 |
ttttcgcgttcggctgtgaactataatgctgggtgcaagactgcagcatcaaacattgtaatggcaatagcagtgatgttgacattattattcctaacac |
38215910 |
T |
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| Q |
118 |
ctttgttctattacactcctctggtggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccatctctggaagat |
217 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| | ||||| || |
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| T |
38215909 |
ctttgtttcattacactcctctagtggtactagcagccataattgtatctgcaatgcttggactcattgattatgaagcagcaatccatttgtggaaaat |
38215810 |
T |
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| Q |
218 |
tgacaaattcgattttttcgtctgcattagcgcgtatatgggcgttgtctttggcagtgttgaaattggcttagtcatagcagtatgtatca |
309 |
Q |
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| T |
38215809 |
tgacaaatttgattttttagtatgcttcagtgcatattttggagttgtttttggcagtgttgaaattggcttaataatagcagtatgtatca |
38215718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 40818456 - 40818512
Alignment:
| Q |
252 |
tatatgggcgttgtctttggcagtgttgaaattggcttagtcatagcagtatgtatc |
308 |
Q |
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| T |
40818456 |
tatattggcgttgtttttggcagtgttgaaattgacttagtcatggttgtatgtatc |
40818512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1494858 - 1494902
Alignment:
| Q |
189 |
tatgaagcagccatccatctctggaagattgacaaattcgatttt |
233 |
Q |
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| T |
1494858 |
tatgaagcagccattcttctgtggaagattgacaaatttgatttt |
1494902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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