View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_74 (Length: 321)
Name: NF19103_high_74
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_74 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 1414204 - 1414384
Alignment:
| Q |
135 |
gctagctaagatattccaaatccaatttaggatttttatttcatnnnnnnnngggatatggaaggagaaagagatgttcccaattatgatctccaagttt |
234 |
Q |
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| T |
1414204 |
gctagctaagatattccaaatccaatttaggatttttatttcataaaaaaaagggatatggatggagaaagagatgttcccaattatgatctccaagttt |
1414303 |
T |
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| Q |
235 |
cattcacaaatacccctcaagctattcatgaaatgggttttgttcaatttgaagaaaatcaagttcttagcttcttctcac |
315 |
Q |
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| T |
1414304 |
cattcacaaatacccctcaagctattcatgaaatgggttttgttcaatttgaagaaaatcaagttcttagtttcttgtcac |
1414384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 1414089 - 1414177
Alignment:
| Q |
20 |
gaccaaactatacacacaaaccctcacatgtcatagaatttgtatgtgctattagaagatcaagctaagctagcaagcatataagtaac |
108 |
Q |
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| T |
1414089 |
gaccaaactatacacacaaaccctcacatgtcatagaatttgtatgtgctattagaagatcaagctaagctagcaagcatataagtaac |
1414177 |
T |
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