View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_80 (Length: 313)
Name: NF19103_high_80
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 31379285 - 31379584
Alignment:
| Q |
7 |
cacaacaattggtgatcagtagtacagatattggcagtatgatagaaaaattggagacttgtgtgaaggagcttaagcaccaaaattcaaagttcattca |
106 |
Q |
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| T |
31379285 |
cacaacaattggtgatcagtagtacagatattggcagtatgatagaaaaattggagacttgtgtgaaggagcttaagcaccaaaattcaaagttcattca |
31379384 |
T |
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| Q |
107 |
aattcctttagggcatgcnnnnnnntatgaacactctcaattggtgctggtgaatcccaacttcatgacaaacattctgaacaaagaacctatcgaagac |
206 |
Q |
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| T |
31379385 |
aattcctttagggcatgcaaaaaaatatgaacactctcaattggtgctggtgaatcccaacttcatgacaaacatgctgaacaaagaacctatcaaagac |
31379484 |
T |
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| Q |
207 |
cttgaggagaaaacaaatcttatggtgaacggcgggtttgagaaggatttttcctatgtgtacaacaattgttgtagggaatcttccacagcctcttaca |
306 |
Q |
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| T |
31379485 |
cttgaggagaaaacaaatcttatggtgaacggcgggtttgagaaggatttttcctatgtgtacaacaattgttgtagggaatcttccacagcctcttaca |
31379584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 31330503 - 31330802
Alignment:
| Q |
7 |
cacaacaattggtgatcagtagtacagatattggcagtatgatagaaaaattggagacttgtgtgaaggagcttaagcaccaaaattcaaagttcattca |
106 |
Q |
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| T |
31330503 |
cacaacaattggtgatcagtagtacagatattggcagtatgatagaaaaattggagacttgtgtgaaggagcttaagcaccaaaattcaaagttcattca |
31330602 |
T |
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| Q |
107 |
aattcctttagggcatgcnnnnnnntatgaacactctcaattggtgctggtgaatcccaacttcatgacaaacattctgaacaaagaacctatcgaagac |
206 |
Q |
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| T |
31330603 |
aattcctttagggcatgcaaaaaaatatgaacactctcaattggtgctggtgaatcccaacttcatgacaaacatgctgaacaaagaacctatcaaagac |
31330702 |
T |
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| Q |
207 |
cttgaggagaaaacaaatcttatggtgaacggcgggtttgagaaggatttttcctatgtgtacaacaattgttgtagggaatcttccacagcctcttaca |
306 |
Q |
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| T |
31330703 |
cttgaggagaaaacaaatcttatggtgaacggtgggtttgagaaggatttttcctatgtgtacaacaattgttgtagggaatcttccacagcctcttaca |
31330802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 31318209 - 31318246
Alignment:
| Q |
240 |
gggtttgagaaggatttttcctatgtgtacaacaattg |
277 |
Q |
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| T |
31318209 |
gggtttgagaaggatttttccgatgtgtacaacaattg |
31318246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 31369320 - 31369356
Alignment:
| Q |
241 |
ggtttgagaaggatttttcctatgtgtacaacaattg |
277 |
Q |
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| T |
31369320 |
ggtttgagaaggatttttccgatgtgtacaacaattg |
31369356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 31313948 - 31314052
Alignment:
| Q |
184 |
tgaacaaagaacctatcgaagaccttgaggagaaaacaaatcttatggtgaacggcgggtttgagaaggatttttcctatgtgtacaacaattgttgtag |
283 |
Q |
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| T |
31313948 |
tgaagaaagaaaccatcaaagacctagaggaaacaacaaatgttatggcgagggctgggtttgagaacaattttttcgatgtgtacaacaatagtcgtag |
31314047 |
T |
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| Q |
284 |
ggaat |
288 |
Q |
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||||| |
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| T |
31314048 |
ggaat |
31314052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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