View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_82 (Length: 310)
Name: NF19103_high_82
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_82 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 3081658 - 3081378
Alignment:
| Q |
16 |
ataaatccaatagtatattatctaataatttcgatcgttgataaataacaaacggctgagattttgatatctcaatttacgaaaatttatgtacaaatct |
115 |
Q |
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| T |
3081658 |
ataaatccaatagtatattatctaataatctcgattgttgataaaaatcaaatggctgagattttgatatctcaatttgcaaaaatttatgtataaattt |
3081559 |
T |
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| Q |
116 |
tcttatgtttatctaacgacttaaatgaacttactgaagtgattttagaaaatttcaataatataggaaa-ttgagtccaaattatttaccatgttatat |
214 |
Q |
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| T |
3081558 |
tcttatgtttatcttacgacttaaatgaacttactgaagtgactttaagaaatttcgata--ataggaaatttgagtccaaattatttaccatgttatat |
3081461 |
T |
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| Q |
215 |
cca----ctacctaggtaaaatatttgttactgttacttcattgacagaaggatcattggaagcttttgatgatgattcacct |
293 |
Q |
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| T |
3081460 |
ccactacctacctaggtaaaatatttgttactgttacttcattgacagaaggatcattggaagcttttgatgttgattcacct |
3081378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 3095899 - 3095820
Alignment:
| Q |
209 |
ttatatccactacctaggtaaaatatttgttactgttacttcattgacagaaggatcattggaagcttttgatgatgatt |
288 |
Q |
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| T |
3095899 |
ttatatcccctacctaggaaaaacatttgatattgtaacttcattaacagaaggatctttggaagctttagatgttgatt |
3095820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 4547060 - 4547117
Alignment:
| Q |
210 |
tatatccactacctaggtaaaatatttgttactgttacttcattgacagaaggatcat |
267 |
Q |
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| T |
4547060 |
tatatcccctacctaggaaaaatatttgatattgttacttcattaacagaaggatcat |
4547117 |
T |
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