View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_87 (Length: 297)
Name: NF19103_high_87
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_87 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7523343 - 7523639
Alignment:
| Q |
1 |
aatgagagcatatgggttatcttgaaggaaattaaacaaccaaggaatatccatgatgaaatgtaacaatagaagaaaaatcacgtatacatctaagata |
100 |
Q |
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| T |
7523343 |
aatgagagcatatgggttatcttgaaggaaattaaacaaccaaagaatatccatgatgaaatgtaacaatagaagaaaaatcacgtatgcatttaagata |
7523442 |
T |
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| Q |
101 |
tgacaattgatacaaattgacataaaaggaaattgtgtgttgctggcatatctaatatttagagtaaattttaccatgaataatttgggtatttaaacct |
200 |
Q |
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| T |
7523443 |
tgacaattgatacaaattgacataaaaggaaattgtgtgttgctagcatatctaatatttagagtaaattttaccatgaataatttgggtatttaaacct |
7523542 |
T |
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| Q |
201 |
taaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactccattcttccaccatcctcctccct |
297 |
Q |
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| T |
7523543 |
taaaacagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactccattcttccaccatcctcctccct |
7523639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 7522505 - 7522346
Alignment:
| Q |
1 |
aatgagagcatatgggttatcttgaaggaaattaaacaaccaaggaatatccat--gatgaaatgtaacaatagaagaaaaatcacgtatacatctaaga |
98 |
Q |
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| T |
7522505 |
aatgggagcatctggattatcttgaaggaaattgagcaacaaaggaatatccatatgatgaaatgtaacatgagaagaagaatcacatatgcatttaaga |
7522406 |
T |
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| Q |
99 |
tatgacaattgatacaaattgacataaaaggaaattgtgtgttgctggcatatctaatatt |
159 |
Q |
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| T |
7522405 |
tatgacaattgatacacattgacct-aaaggaaattgtgtgttgctagcatatctaatatt |
7522346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 943933 - 944054
Alignment:
| Q |
175 |
catgaataatttgggtatttaaaccttaaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactcc |
274 |
Q |
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| T |
943933 |
catgaataatttgggtatttcaaccttaaagcat-ggtagtattgtaaatacataacaccccattcttcgtctcttctttgcgtgtgcttttctttctcc |
944031 |
T |
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| Q |
275 |
attcttccaccatcctcctccct |
297 |
Q |
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| T |
944032 |
attcttccaccatcctcctccct |
944054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 961413 - 961526
Alignment:
| Q |
184 |
tttgggtatttaaaccttaaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactccattcttcca |
283 |
Q |
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||||||||||| ||||||||| || ||| || |||||||| || |||| ||||||||| |||| ||| || |||||||||||| |||||| |||||| |
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| T |
961413 |
tttgggtatttcaaccttaaagcaggggcagtattgtaaatacatcacaccccattcttactctcttctttgtgtgtgcttttctttctccatccttcca |
961512 |
T |
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| Q |
284 |
ccatcctcctccct |
297 |
Q |
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| T |
961513 |
ccatcctcatccct |
961526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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