View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_89 (Length: 294)
Name: NF19103_high_89
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 2792933 - 2792656
Alignment:
| Q |
12 |
atcaaactaaacaagcataaatatattcatgattgaaattaaattacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatt |
111 |
Q |
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| T |
2792933 |
atcaaactaaacaagcataaatatattcatgattgaaattaaattacctccatggtaagagcattgaagagaagcagtgtaacaagaagctgatgtgatt |
2792834 |
T |
|
| Q |
112 |
tttcaaccaaaggaattatgattgctgcatgcataataaggtgaattag---gttttcaatcataacaacaataacaaataatattacttaaactatgtg |
208 |
Q |
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| T |
2792833 |
tttcaaccaaaggaattatgatttctgcatgcataataaggtgaattgttgagttttcaatggtaacaacaataacaaacaatattacttaaactatgtg |
2792734 |
T |
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| Q |
209 |
tt-aaaggaacagttaccagcttgnnnnnnnncaaaagaagaaccacttagtttgagaatttctaagttaatgatttt |
285 |
Q |
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| T |
2792733 |
ttaaaaagaatagttaccagcttgttttttctcagaagaagaaccacttagtttgagaatttctaagttaatgatttt |
2792656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 48667649 - 48667548
Alignment:
| Q |
40 |
atgattgaaattaaattacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgattgctgc |
139 |
Q |
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|||||||||||| |||||||||||| |||| ||||| |||||||||| ||||||||||| |||||| ||||| ||| | |||| |||||| ||||| |
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| T |
48667649 |
atgattgaaattgaattacctccatagcaacggcattacagagaagcagagtaacaagaagttgatgttgttttttaacgacgggaagtatgatcgctgc |
48667550 |
T |
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| Q |
140 |
at |
141 |
Q |
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|| |
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| T |
48667549 |
at |
48667548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 16388451 - 16388353
Alignment:
| Q |
43 |
attgaaattaaattacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgattgctgcat |
141 |
Q |
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||||||||| |||||||||||| | || |||||| ||||||||| |||||||||||||| ||| ||||| ||||| |||| ||||||||||||| |
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| T |
16388451 |
attgaaattgaattacctccatagaaacagcattacagagaagcaaagtaacaagaagctggtgttgttttttaaccacgggaagaatgattgctgcat |
16388353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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